1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gctctttttcatttttgaatattgcaagtgcaagtatttaattcatctcctgaatccttgagaagaatatttccctccttgacttttcatttgtttgcagGCATTAACAGAACAGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTATGCAGATCTTTGTTCCTTTCTTGATGCAAAAGCTTGTGTTGACA
species | Glycine max |
transcript | GLYMA17G35330.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGCAAGAAAAGAGCATTGGCTTCAAGCTAAGACATTCAGGCACGAG GCATTAACAGAACAGAAGTTGGAAGTGGAAGCCTGGCAGGATTTGGCTACCEST: gi|193428919|gb|FK397591.1|FK397591
genomic: TTGAAGCAAGAAAAGAGCATTGGCTTCAAGCTAAGACATTCAGGCACGAGgtttgtatta ... ttgtttgcagGCATTAACAGAACAGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACC
EST: TTGAAGCAAGAAAAGAGCATTGGCTTCAAGCTAAGACATTCAGGCACGAG GCATTAACAGAACAGAAGTTGGAAGTGGAAGCCTGGCAGGATTTGGCTACC
genomic: TTGAAGCAAGAAAAGAGCATTGGCTTCAAGCTAAGACATTCAGGCACGAGgtttgtatta ... ttgtttgcagGCATTAACAGAACAGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACC
tctcctgaatccttgagaagaatatttccctccttgacttttcatttgtttgcagGCATTAACAGAACAGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTATGCAGATCTTTGTTCCTTTCTTGATGCAAAAGCTTGTGTTGACA
ccttgac putative branch site (score: 4)
tttccctccttgactt CT-rich tract
aagaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctctttttcatttttgaatattgcaagtgcaagtatttaattcatctcctgaatccttgagaagaatatttccctccttgacttttcatttgtttgcagGCATTAACAGAACAGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTATGCAGATCTTTGTTCCTTTCTTGATGCAAAAGCTTGTGTTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - -tattgca
- - - - - - - - - - - tgcaagt
- - - - - - - - - - - - - - - - - - - - - - - ctcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaagaa