1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcaatacatgaagttgctaaaaacattttttttggtttcctcctattgtgaggtatgcccaataatgatggaattaaccatgtatgcattttatttttagGCATGAACTTCTCCTTTTTGAGGCCCTACGCGAAGGTTTGGAGGAAGAAATGGAGAGGGATCCTTGTGTATGTGTCATGGGTGAAGATGTAGGTCATTAT
species | Glycine max |
transcript | GLYMA17G34960.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAAAGGGAGCCAGTTCTGCGGCTTCTACATCAAAATCTGGATCTGG GCATGAACTTCTCCTTTTTGAGGCCCTACGCGAAGGTTTGGAGGAAGAAATEST: gi|24135934|gb|BU926444.1|BU926444
genomic: ACAAAGGGAGCCAGTTCTGCGGCCTCTACATCAAAATCTGGATCTGGgtatgtctct ... ttatttttagGCATGAACTTCTCCTTTTTGAGGCCCTACGCGAAGGTTTGGAGGAAGAAAT
EST: ACAAAGGGAGCCAGTTCTGCGGCCTCTACATCAAAATCTGGATCTGG GCATGAACTTCTCCTTTTTGAGGCCCTACGCGAAGGTTTGGAGGAAGAAATEST: gi|18732421|gb|BM527035.1|BM527035
genomic: ACAAAGGGAGCCAGTTCTGCGGCCTCTACATCAAAATCTGGATCTGGgtatgtctct ... ttatttttagGCATGAACTTCTCCTTTTTGAGGCCCTACGCGAAGGTTTGGAGGAAGAAAT
EST: ACAAAGGGAGCCAGTTCTGCGGCTTCTACATCAAAATCTGGATCTGG GCATGAACTTCTCCTTTTTGAGGCCCTACGCGAAGGTTTGGAGGAAGAAATEST: gi|24135854|gb|BU926364.1|BU926364
genomic: ACAAAGGGAGCCAGTTCTGCGGCCTCTACATCAAAATCTGGATCTGGgtatgtctct ... ttatttttagGCATGAACTTCTCCTTTTTGAGGCCCTACGCGAAGGTTTGGAGGAAGAAAT
EST: ACAAAGGGAGCCAGTTCTGCGGCCTCTACATCAAAATCTGGATCTGG GCATGAACTTCTCCTTTTTGAGGCCCTACGCGAAGGTTTGGAGGAAGAAAT
genomic: ACAAAGGGAGCCAGTTCTGCGGCCTCTACATCAAAATCTGGATCTGGgtatgtctct ... ttatttttagGCATGAACTTCTCCTTTTTGAGGCCCTACGCGAAGGTTTGGAGGAAGAAAT
ttgtgaggtatgcccaataatgatggaattaaccatgtatgcattttatttttagGCATGAACTTCTCCTTTTTGAGGCCCTACGCGAAGGTTTGGAGGAAGAAATGGAGAGGGATCCTTGTGTATGTGTCATGGGTGAAGATGTAGGTCATTAT
aattaac putative branch site (score: 2)
ttttattttt putative PPT
tatgcattttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatacatgaagttgctaaaaacattttttttggtttcctcctattgtgaggtatgcccaataatgatggaattaaccatgtatgcattttatttttagGCATGAACTTCTCCTTTTTGAGGCCCTACGCGAAGGTTTGGAGGAAGAAATGGAGAGGGATCCTTGTGTATGTGTCATGGGTGAAGATGTAGGTCATTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - tacatga
- - - - - - - - - aaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - gtatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgca