1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttactttagggactaaattcagtgccactcagaccaatgacttttcggttaagcgttagtgttttttgacttttaaatgttgtttctttgattggttcagAGAGGAAAGATGGCATATTTGTGGTCAGATCTGATGCTGATGCAAGGATTCTGAAGACTGGAGCTCGTAAGCATGAATTGTTGGTTACTAATGCAGTTGC
species | Glycine max |
transcript | GLYMA17G34960.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCATTCTCTTCTTCCCACTCCAACAAGTTCATGCTTTCTTCCCTCTCAG AGAGGAAAGATGGCATATTTGTGGTCAGATCTGATGCTGATGCAAGGATTCEST: gi|213596299|gb|DB960228.1|DB960228
genomic: ATCATTCTCTTCTTCCCACTCCAACAAGTTCATGCTTTCTTCCCTCTCAGgttcgcttct ... attggttcagAGAGGAAAGATGGCATATTTGTGGTCAGATCTGATGCTGATGCAAGGATTC
EST: ATCATTCTCTTCTTCCCACTCCAACAAGTTCATGCTTTCTTCCCTCTCAG AGAGGAAAGATGGCATATTTGTGGTCAGATCTGATGCTGATGCAAGGATTCEST: gi|24135934|gb|BU926444.1|BU926444
genomic: ATCATTCTCTTCTTCCCACTCCAACAAGTTCATGCTTTCTTCCCTCTCAGgttcgcttct ... attggttcagAGAGGAAAGATGGCATATTTGTGGTCAGATCTGATGCTGATGCAAGGATTC
EST: ATCATTCTCTTCTTCCCACTCCAACAAGTTCATGCTTTCTTCCCTCTCAG AGAGGAAAGATGGCATATTTGTGGTCAGATCTGATGCTGATGCAAGGATTCEST: gi|151400464|gb|EV270278.1|EV270278
genomic: ATCATTCTCTTCTTCCCACTCCAACAAGTTCATGCTTTCTTCCCTCTCAGgttcgcttct ... attggttcagAGAGGAAAGATGGCATATTTGTGGTCAGATCTGATGCTGATGCAAGGATTC
EST: ATCATTCTCTTCTTCCCACTCCAACAAGTTCATGCTTTCTTCCCTCTCAG AGAGGAAAGATGGCATATTTGTGGTCAGATCTGATGCTGATGCAAGGATTCEST: gi|24135854|gb|BU926364.1|BU926364
genomic: ATCATTCTCTTCTTCCCACTCCAACAAGTTCATGCTTTCTTCCCTCTCAGgttcgcttct ... attggttcagAGAGGAAAGATGGCATATTTGTGGTCAGATCTGATGCTGATGCAAGGATTC
EST: ATCATTCTCTTCTTCCCACTCCAACAAGTTCATGCTTTCTTCCCTCTCAG AGAGGAAAGATGGCATATTTGTGGTCAGATCTGATGCTGATGCAAGGATTC
genomic: ATCATTCTCTTCTTCCCACTCCAACAAGTTCATGCTTTCTTCCCTCTCAGgttcgcttct ... attggttcagAGAGGAAAGATGGCATATTTGTGGTCAGATCTGATGCTGATGCAAGGATTC
cggttaagcgttagtgttttttgacttttaaatgttgtttctttgattggttcagAGAGGAAAGATGGCATATTTGTGGTCAGATCTGATGCTGATGCAAGGATTCTGAAGACTGGAGCTCGTAAGCATGAATTGTTGGTTACTAATGCAGTTGC
ttttttgacttttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttactttagggactaaattcagtgccactcagaccaatgacttttcggttaagcgttagtgttttttgacttttaaatgttgtttctttgattggttcagAGAGGAAAGATGGCATATTTGTGGTCAGATCTGATGCTGATGCAAGGATTCTGAAGACTGGAGCTCGTAAGCATGAATTGTTGGTTACTAATGCAGTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - tgccact
- - - - - - - - - - - - - - - - - caatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - gttagtg