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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttatctcattccattcccttttttgcagtttggtttgtgatcaatgctgtcatcaagtttgtaaattgtgctttttggctgtttatttatagACAAAGGGAGCCAGTTCTGCGGCCTCTACATCAAAATCTGGATCTGG

Basic information

species Glycine max
transcript GLYMA17G34960.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208291089|gb|GE081557.1|GE081557
EST:     GAAGACTGGAGCTCGTAAGCATGAATTGTTGGTTACTAATGCAGTTGACA                         ACAAAGGGAGCCAGTTCTGCGGCCTCTAC
genomic: GAAGACTGGAGCTCGTAAGCATGAATTGTTGGTTACTAATGCAGTTG-CAgtgagttatc ... ttatttatagACAAAGGGAGCCAGTTCTGCGGCCTCTAC
EST: gi|213596299|gb|DB960228.1|DB960228
EST:     TGAAGACTGGAGCTCGTAAGCATGAATTGTTGGTTACTAATGCAGTTGCA                         ACAAAGGGAGCCAGTTCTGCGGCTTCTACATCAAAATCTGGATCTGG
genomic: TGAAGACTGGAGCTCGTAAGCATGAATTGTTGGTTACTAATGCAGTTGCAgtgagttatc ... ttatttatagACAAAGGGAGCCAGTTCTGCGGCCTCTACATCAAAATCTGGATCTGG
EST: gi|24135934|gb|BU926444.1|BU926444
EST:     TGAAGACTGGAGCTCGTAAGCATGAATTGTTGGTTACTAATGCAGTTGCA                         ACAAAGGGAGCCAGTTCTGCGGCCTCTACATCAAAATCTGGATCTGG
genomic: TGAAGACTGGAGCTCGTAAGCATGAATTGTTGGTTACTAATGCAGTTGCAgtgagttatc ... ttatttatagACAAAGGGAGCCAGTTCTGCGGCCTCTACATCAAAATCTGGATCTGG
EST: gi|151400464|gb|EV270278.1|EV270278
EST:     TGAAGACTGGAGCTCGTAAGCATGAATTGTTGGTTACTAATGCAGTTGCA                         ACAAAGGGAGCCAGTTCTGCGGCCTCTACATCAAAATCTGG
genomic: TGAAGACTGGAGCTCGTAAGCATGAATTGTTGGTTACTAATGCAGTTGCAgtgagttatc ... ttatttatagACAAAGGGAGCCAGTTCTGCGGCCTCTACATCAAAATCTGG
EST: gi|24135854|gb|BU926364.1|BU926364
EST:     TGAAGACTGGAGCTCGTAAGCATGAATTGTTGGTTACTAATGCAGTTGCA                         ACAAAGGGAGCCAGTTCTGCGGCCTCTACATCAAAATCTGGATCTGG
genomic: TGAAGACTGGAGCTCGTAAGCATGAATTGTTGGTTACTAATGCAGTTGCAgtgagttatc ... ttatttatagACAAAGGGAGCCAGTTCTGCGGCCTCTACATCAAAATCTGGATCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatcaatgctgtcatcaagtttgtaaattgtgctttttggctgtttatttatagACAAAGGGAGCCAGTTCTGCGGCCTCTACATCAAAATCTGGATCTGG
                                            tttattt  CT-rich tract
                                          tgtttatttata  TA-rich tract