1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttagtcttagattgatagggcattttaaaatgtcgagaaattgaattgccttcatatataaaatttttggtgacattgtctcctgcatttgtttctgcagATCTGGTTGCCATTGCAGAAAGAATGGCTACTGTGAAACATAAGATATTGGTCTTGTCAGGAAAGGGAGGAGTTGGCAAGAGCACGTTCTCTGCCCAACT
species | Glycine max |
transcript | GLYMA17G34650.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGCCCGAATCAACAAATTTGTGCCACTGCCCCCAAAGGACCTGACCCTG ATCTGGTTGCCATTGCAGAAAGAATGGCTACTGTGAAACATAAGATATTGGEST: gi|298188290|gb|HO034983.1|HO034983
genomic: GTGCCCGAATCAACAAATTTGTGCCACTGCCCCCAAAGGACCTGACCCTGgtacgcttca ... gtttctgcagATCTGGTTGCCATTGCAGAAAGAATGGCTACTGTGAAACATAAGATATTGG
EST: GTGCCCGAATCAACAAATTTGTGCCACTGCCCCCAAAGGACCTGACCCTG ATCTGGTTGCCATTGCAGAAAGAATGGCTACTGTGAAACATAAGATATTGGEST: gi|298170678|gb|HO019302.1|HO019302
genomic: GTGCCCGAATCAACAAATTTGTGCCACTGCCCCCAAAGGACCTGACCCTGgtacgcttca ... gtttctgcagATCTGGTTGCCATTGCAGAAAGAATGGCTACTGTGAAACATAAGATATTGG
EST: GTGCCCGAATCAACAAATTTGTGCCACTGCCCCCAAAGGACCTGACCCTG ATCTGGTTGCCATTGCAGAAAGAATGGCTACTGTGAAACATAAGATATTGGEST: gi|19269812|gb|BM886068.1|BM886068
genomic: GTGCCCGAATCAACAAATTTGTGCCACTGCCCCCAAAGGACCTGACCCTGgtacgcttca ... gtttctgcagATCTGGTTGCCATTGCAGAAAGAATGGCTACTGTGAAACATAAGATATTGG
EST: GTGCCCGAATCAACAAATTTGTGCCACTGCCCCCAAAGGACCTGACCCTG ATCTGGTTGCCATTGCAGAAAGAATGGCTACTGTGAAACATAAGATATTGG
genomic: GTGCCCGAATCAACAAATTTGTGCCACTGCCCCCAAAGGACCTGACCCTGgtacgcttca ... gtttctgcagATCTGGTTGCCATTGCAGAAAGAATGGCTACTGTGAAACATAAGATATTGG
ttgccttcatatataaaatttttggtgacattgtctcctgcatttgtttctgcagATCTGGTTGCCATTGCAGAAAGAATGGCTACTGTGAAACATAAGATATTGGTCTTGTCAGGAAAGGGAGGAGTTGGCAAGAGCACGTTCTCTGCCCAACT
tttgtttct CT-rich tract
ttcatatataaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagtcttagattgatagggcattttaaaatgtcgagaaattgaattgccttcatatataaaatttttggtgacattgtctcctgcatttgtttctgcagATCTGGTTGCCATTGCAGAAAGAATGGCTACTGTGAAACATAAGATATTGGTCTTGTCAGGAAAGGGAGGAGTTGGCAAGAGCACGTTCTCTGCCCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - ggcattt
- - - - - - - - - - - - - - - - - - - - - - - tgccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgac