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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtattcacttttcttttgtttctggaatttcactttgcttttatagttttatatataccaatggatatgattgttttgcttttttattgtggcatttacagATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAGGGTGCCCGAATCAACAAATTTGTGCCACTGCCCCCAAAGGACCTGACCC

Basic information

species Glycine max
transcript GLYMA17G34650.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34650.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G50960.1 (Arabidopsis thaliana), 3'ss of exon 1
gtatgtattcacttttcttttgtttctggaatttcactttgcttttatagttttatatataccaatggatatgattg--ttttgcttttttattgtggcatttacagATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAGGGTGCCCGAATCAACAAATTTGTGCCACTGCCCCCAAAGGACCTGACCC
    |||  ||   |   |   ||| |    ||||   | ||||  || | | |   |       |  |  | ||||  ||||| | |||  |||     || | |||||||||||||||||| || ||||||||||||||||| ||| | ||||  || ||||| |||||  ||  |||||| ||||| || ||||||||||||||
----gtaagcaaaatcaatccttttttcagttttcttgtagcttcaatcgctcttctttcttggtttaacctaattgggttttgttctttggttgct-tgttaatagATTGCCCAGGTCCTCAATCAGAATCTGCTGGAAAATCAGATTCTTGTGCTGGCTGCCCTAATCAGGAAGCTTGTGCTACTGCTCCTAAAGGACCTGACCC

upper sequence: GLYMA17G34650.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0171g00460.t01 (Vitis vinifera), 3'ss of exon 1
gtatgtattcacttttcttttgtttctggaatttcactttgcttttatagttttatatataccaatggatatgattgttttgcttttttattgtggcatttacagATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAGGGTGCCCGAATCAACAAATTTGTGCCACTGCCCCCAAAGGACCTGACCC
   | | || | ||| |||||| |  |    | |  |   |      ||||| |   | | |  |        |||  || |  || || ||     || ||||||||||||||||||||| || || ||||| ||| ||||||| || ||| | || ||||| |||||  |   |||||| ||||| || ||||| ||||||||
--gtatgttgattttccttttggtcttc---tcttccaaagtccaagtagttgtgggtttcctca--------atttcttcgtcttcttgtt----tatctacagATTGCCCAGGTCCTCAATCGGAGTCTGCAGGACAATCTGACGCTTGTCAGGGATGCCCTAATCAGGAGGCTTGTGCTACTGCGCCTAAAGGCCCTGACCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208308354|gb|GE102880.1|GE102880
EST:     GAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGC                         ATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAG
genomic: GAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGCgtatgtattc ... gcatttacagATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAG
EST: gi|192296883|gb|FG990244.1|FG990244
EST:     GAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGC                         ATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAG
genomic: GAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGCgtatgtattc ... gcatttacagATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAG
EST: gi|298188290|gb|HO034983.1|HO034983
EST:     GAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGC                         ATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAG
genomic: GAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGCgtatgtattc ... gcatttacagATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAG
EST: gi|298170678|gb|HO019302.1|HO019302
EST:     GAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGC                         ATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAG
genomic: GAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGCgtatgtattc ... gcatttacagATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatatataccaatggatatgattgttttgcttttttattgtggcatttacagATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAGGGTGCCCGAATCAACAAATTTGTGCCACTGCCCCCAAAGGACCTGACCC
                           ttttgcttttttatt  TA-rich tract