1 5' 3' | 2 5' 3' | 3 5' 3' |
...cctgttctttgattctatgaccttactgtttgcttgtcattgccacaaaacccttacactgcctatctcatcttttatttgtgacacgttctttcttcagATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGC
species | Glycine max |
transcript | GLYMA17G34650.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCAAACACGACGCTGCGCCTTGTGTAGTTGCCCAACGCCGCGCCACCAG ATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGCEST: gi|192296883|gb|FG990244.1|FG990244
genomic: ACCAAACACGACGCTGCGCCTTGTGTAGTTGCCCAACGCCGCGCCACCAGgtttttccat ... ctttcttcagATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGC
EST: ACCAAACACGACGCTGCGCCTTGTGTAGTTGCCCAACGCCGCGCCACCAG ATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGCEST: gi|298188290|gb|HO034983.1|HO034983
genomic: ACCAAACACGACGCTGCGCCTTGTGTAGTTGCCCAACGCCGCGCCACCAGgtttttccat ... ctttcttcagATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGC
EST: ACCAAACACGACGCTGCGCCTTGTGTAGTTGCCCAACGCCGCGCCACCAG ATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGCEST: gi|298170678|gb|HO019302.1|HO019302
genomic: ACCAAACACGACGCTGCGCCTTGTGTAGTTGCCCAACGCCGCGCCACCAGgtttttccat ... ctttcttcagATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGC
EST: ACCAAACACGACGCTGCGCCTTGTGTAGTTGCCCAACGCCGCGCCACCAG ATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGC
genomic: ACCAAACACGACGCTGCGCCTTGTGTAGTTGCCCAACGCCGCGCCACCAGgtttttccat ... ctttcttcagATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGC
caaaacccttacactgcctatctcatcttttatttgtgacacgttctttcttcagATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGC
cccttac putative branch site (score: 3)
cacgttctttcttc putative PPT
atcttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgttctttgattctatgaccttactgtttgcttgtcattgccacaaaacccttacactgcctatctcatcttttatttgtgacacgttctttcttcagATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - -cattgcc
- - - - - - - - - - - - - - - - - - - - - - -caaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - cttacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacacg