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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTAATAAAATCACACTTGTTTTTGTTTTGAAAACCTTGAGATTTGAGAACCAAACACGACGCTGCGCCTTGTGTAGTTGCCCAACGCCGCGCCACCAGgtttttccatcaaaagcttcttcttcttcttagaatgtttacttttatgctttttctgtggtatgctatctatcaatctcgttgtatgccttttctttct...

Basic information

species Glycine max
transcript GLYMA17G34650.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208308354|gb|GE102880.1|GE102880
EST:     ACCAAACACGACGCTGCGCCTTGTGTAGTTGCCCAACGCCGCGCCACCAG                         ATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGC
genomic: ACCAAACACGACGCTGCGCCTTGTGTAGTTGCCCAACGCCGCGCCACCAGgtttttccat ... ctttcttcagATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGC
EST: gi|192296883|gb|FG990244.1|FG990244
EST:     ACCAAACACGACGCTGCGCCTTGTGTAGTTGCCCAACGCCGCGCCACCAG                         ATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGC
genomic: ACCAAACACGACGCTGCGCCTTGTGTAGTTGCCCAACGCCGCGCCACCAGgtttttccat ... ctttcttcagATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGC
EST: gi|298188290|gb|HO034983.1|HO034983
EST:     ACCAAACACGACGCTGCGCCTTGTGTAGTTGCCCAACGCCGCGCCACCAG                         ATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGC
genomic: ACCAAACACGACGCTGCGCCTTGTGTAGTTGCCCAACGCCGCGCCACCAGgtttttccat ... ctttcttcagATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGC
EST: gi|298170678|gb|HO019302.1|HO019302
EST:     ACCAAACACGACGCTGCGCCTTGTGTAGTTGCCCAACGCCGCGCCACCAG                         ATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGC
genomic: ACCAAACACGACGCTGCGCCTTGTGTAGTTGCCCAACGCCGCGCCACCAGgtttttccat ... ctttcttcagATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGC