1 5' 3' | 2 5' 3' | 3 5' 3' |
ATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGCgtatgtattcacttttcttttgtttctggaatttcactttgcttttatagttttatatataccaatggatatgattgttttgcttttttattgtggcatttacag
species | Glycine max |
transcript | GLYMA17G34650.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGC ATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAGEST: gi|192296883|gb|FG990244.1|FG990244
genomic: GAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGCgtatgtattc ... gcatttacagATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAG
EST: GAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGC ATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAGEST: gi|298188290|gb|HO034983.1|HO034983
genomic: GAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGCgtatgtattc ... gcatttacagATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAG
EST: GAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGC ATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAGEST: gi|298170678|gb|HO019302.1|HO019302
genomic: GAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGCgtatgtattc ... gcatttacagATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAG
EST: GAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGC ATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAG
genomic: GAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGCgtatgtattc ... gcatttacagATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGTTACACTTTTTTCTTCAACTCAAGAGAAGAGCTTCCATGGAGAATGCAGACATCCCTGAGAATGCCAACGAGCgtatgtattcacttttcttttgtttctggaatttcactttgcttttatagttttatatataccaatggatatgattgttttgcttttttattgtggcatttacag
- - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - GGAGAA