Sequence
atgc intronic sequence ATGC exonic sequenceTGTAGCAGGAATTGCAGCAACTGCAACAGCTAGTGGGGGGAAATTTGACAAGAAATTGGCAGGTGAAAAGCCTCAGAAACATGAAGGAAAATATCGGAAGgttgtgtgctgtgctctcactgatatatgtttctcttgtccatgtaaattatcatatatagaagcacccaatttttaactaaattggctaattaacttcctttgttttgttttcatctag
Basic information
species | Glycine max |
transcript | GLYMA17G12440.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G12440.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0048g02730.t01 (Vitis vinifera), 5'ss of exon 6
TGTAGCAGGAATTGCAGCAACTGCAACAGCTAGTGGGGGGAAATTTGACAAGAAATTGGCAGGTGAAAAGCCTCAGAAACATGAAGGAAAATATCGGAAGgttgtgtgc-tgtgctctcactgatatatgtttctcttgtccatgtaaattatcatatatagaagcacccaatttttaactaaattggc-taattaacttcctttgttttgttttcatctag
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TGTAGCCAGCATGGCCGCCACTGCAACAGCCAGTGGTGGGAAATTTGACAAGAAGTTGCCTGGAGAAAAACCTGAAAAACATAAAGGAAAGTATCGCAAGgtc-tgtacacataaccctatt-acagtgaattcttcagttctt-----ttcctaactataaaa----------tctgatggagctgacataatccattgtttttatttag-----------
upper sequence: GLYMA17G12440.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0046g01120.t01 (Vitis vinifera), 5'ss of exon 6
TGTAGCAGGAATTGCAGCAACTGCAACAGCTAGTGGGGGGAAATTTGACAAGAAATTGGCAGGTGAAAAGCCTCAGAAACATGAAGGAAAATATCGGAAGgttgtgtgctgtgctctcactgatatatgtttctcttgtccatgtaaattatcatatatagaagcacccaatttttaactaaattggctaattaacttcctttgttttgttttcatctag
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CATAGCAAGCATGGCTGCTGCCGCAACAGCCAGTGGTGGGAAATTTGACAAGAAGTTGGTTGGAGAAAAACCTGAAAAACATAAAGGAAAGTATCGCAAGgt------ctgtgc----------acataactctgtta-ccgtg-aattcttcagttctttttcttcctaaatcttaa--ggaatcactgacttcacctttcccccttgtttttgtttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193329669|gb|FK293673.1|FK293673EST: AAAAGCCTCAGAAACATGAAGGAAAATATCGGAAG TATCTGCCAGTAGTGGAAGGAACCGGGATAGGATCACTGGAGAGGGAGCAA
genomic: AAAAGCCTCAGAAACATGAAGGAAAATATCGGAAGgttgtgtgct ... tttcatctagTTTCTGCCAGTAGTGGAAGGAACCGGGATAGGATCACTGGAGAGGGAGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTAGCAGGAATTGCAGCAACTGCAACAGCTAGTGGGGGGAAATTTGACAAGAAATTGGCAGGTGAAAAGCCTCAGAAACATGAAGGAAAATATCGGAAGgttgtgtgctgtgctctcactgatatatgtttctcttgtccatgtaaattatcatatatagaagcacccaatttttaactaaattggctaattaacttcctttgttttgttttcatctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA