1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttagtctatttgtacttctgcgcttgtgattcttaaatgatttacagcatgtaatctcgatgctgtttatgcagtctgtgtttggattagtgttgttttgtcatttttttactagttcaatgcccgagtcctgtgttattttgcagGCATACAGAAACGGAAGAAAGACAAGATTGTATATGATGAACAGTCTGGAACCTGGAAACGCAGACATGGATATGATCGTGCAAATGATGAAGATGCTAT
species | Glycine max |
transcript | GLYMA17G12440.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAG GCATACAGAAACGGAAGAAAGACAAGATTGTGTATGATGAACAGTCTGGAAEST: gi|12772216|gb|BG237143.1|BG237143
genomic: GCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAGgttagtctat ... tattttgcagGCATACAGAAACGGAAGAAAGACAAGATTGTATATGATGAACAGTCTGGAA
EST: GCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAG GCATACAGAAACGGAAGAAAGACAAGATTGTATATGATGAACAGTCTGGAAEST: gi|209697625|gb|BW663880.1|BW663880
genomic: GCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAGgttagtctat ... tattttgcagGCATACAGAAACGGAAGAAAGACAAGATTGTATATGATGAACAGTCTGGAA
EST: GCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAG GCATACAGAAACGGAAGAAAGACAAGATTGTATATGATGAACAGTCTGGAAEST: gi|15287451|gb|BI471342.1|BI471342
genomic: GCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAGgttagtctat ... tattttgcagGCATACAGAAACGGAAGAAAGACAAGATTGTATATGATGAACAGTCTGGAA
EST: GCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAG GCATACAGAAACGGAAGAAAGACAAGATTGTATATGATGAACAGTCTGGAAEST: gi|192299497|gb|FG992555.1|FG992555
genomic: GCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAGgttagtctat ... tattttgcagGCATACAGAAACGGAAGAAAGACAAGATTGTATATGATGAACAGTCTGGAA
EST: GCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAG GCATACAGAAACGGAAGAAAGACAAGATTGTATATGATGAACAGTCTGGAA
genomic: GCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAGgttagtctat ... tattttgcagGCATACAGAAACGGAAGAAAGACAAGATTGTATATGATGAACAGTCTGGAA
gttgttttgtcatttttttactagttcaatgcccgagtcctgtgttattttgcagGCATACAGAAACGGAAGAAAGACAAGATTGTATATGATGAACAGTCTGGAACCTGGAAACGCAGACATGGATATGATCGTGCAAATGATGAAGATGCTAT
ttatttt CT-rich tract
tttgtcattttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtctatttgtacttctgcgcttgtgattcttaaatgatttacagcatgtaatctcgatgctgtttatgcagtctgtgtttggattagtgttgttttgtcatttttttactagttcaatgcccgagtcctgtgttattttgcagGCATACAGAAACGGAAGAAAGACAAGATTGTATATGATGAACAGTCTGGAACCTGGAAACGCAGACATGGATATGATCGTGCAAATGATGAAGATGCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG