1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acagttgttttcattttatctttggttatgtgcttctagtattttcctgtgtctaatcggttaaaacattgtctcatcaatttttgtgatggtctttcagCTGCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAG
species | Glycine max |
transcript | GLYMA17G12440.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCTTGTCACCTTGCCTCCCCCAACAACTAAATTGCCAAGAGAAAAACAT CTGCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAEST: gi|12772216|gb|BG237143.1|BG237143
genomic: CCCTTGTCACCTTGCCTCCCCCAACAACTAAATTGCCAAGAGAAAAACATgtaaccccac ... ggtctttcagCTGCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAA
EST: CCCTTGTCACCTTGCCTCCCCCAACAACTAAATTGCCAAGAGAAAAACAT CTGCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAEST: gi|209697625|gb|BW663880.1|BW663880
genomic: CCCTTGTCACCTTGCCTCCCCCAACAACTAAATTGCCAAGAGAAAAACATgtaaccccac ... ggtctttcagCTGCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAA
EST: CCCTTGTCACCTTGCCTCCCCCAACAACTAAATTGCCAAGAGAAAAACAT CTGCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAEST: gi|15287451|gb|BI471342.1|BI471342
genomic: CCCTTGTCACCTTGCCTCCCCCAACAACTAAATTGCCAAGAGAAAAACATgtaaccccac ... ggtctttcagCTGCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAA
EST: CCCTTGTCACCTTGCCTCCCCCAACAACTAAATTGCCAAGAGAAAAACAT CTGCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAEST: gi|192299497|gb|FG992555.1|FG992555
genomic: CCCTTGTCACCTTGCCTCCCCCAACAACTAAATTGCCAAGAGAAAAACATgtaaccccac ... ggtctttcagCTGCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAA
EST: CCCTTGTCACCTTGCCTCCCCCAACAACTAAATTGCCAAGAGAAAAACAT CTGCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAA
genomic: CCCTTGTCACCTTGCCTCCCCCAACAACTAAATTGCCAAGAGAAAAACATgtaaccccac ... ggtctttcagCTGCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAA
cctgtgtctaatcggttaaaacattgtctcatcaatttttgtgatggtctttcagCTGCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAG
gtctaat putative branch site (score: 3)
tctttc putative PPT
ttaaaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acagttgttttcattttatctttggttatgtgcttctagtattttcctgtgtctaatcggttaaaacattgtctcatcaatttttgtgatggtctttcagCTGCCAAAACCAAAACCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - -ggttatg
- - - - - - - - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtg