1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gtgtgtgctgaaatgttcattttcgaccatttggtgatgtagattgataaccatctgttaacttgttgctgctgatttttctttttatttaaactcgtagATCAATGCTGCAGAATTTGTTTGCCCATTCTGGTTTTCTGCTGACACAAAGTCATTCATACAAAAAATTCTGGATCCTAATCCTAAAACA
species | Glycine max |
transcript | GLYMA17G12250.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGGATATCTTCCTTTTGAGGAGGCAGACCTTCCAACACTGTATAGAAGG ATCAATGCTGCAGAATTTGTTTGCCCATTCTGGTTTTCTGCTGACACAAAGEST: gi|151394038|gb|EV263909.1|EV263909
genomic: CTGGATATCTTCCTTTTGAGGAGGCAGACCTTCCAACACTGTATAGAAGGgtattctacc ... aaactcgtagATCAATGCTGCAGAATTTGTTTGCCCATTCTGGTTTTCTGCTGACACAAAG
EST: CTGGATATCTTCCTTTTGAGGAGGCAGACCTTCCAACACTGTATAGAAGG ATCAATGCTGCAGAATTTGTTTGCCCATTCTGGTTTTCTGCTGACACAAAG
genomic: CTGGATATCTTCCTTTTGAGGAGGCAGACCTTCCAACACTGTATAGAAGGgtattctacc ... aaactcgtagATCAATGCTGCAGAATTTGTTTGCCCATTCTGGTTTTCTGCTGACACAAAG
gataaccatctgttaacttgttgctgctgatttttctttttatttaaactcgtagATCAATGCTGCAGAATTTGTTTGCCCATTCTGGTTTTCTGCTGACACAAAGTCATTCATACAAAAAATTCTGGATCCTAATCCTAAAACA
tttttctttttattta CT-rich tract
tgatttttctttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtgctgaaatgttcattttcgaccatttggtgatgtagattgataaccatctgttaacttgttgctgctgatttttctttttatttaaactcgtagATCAATGCTGCAGAATTTGTTTGCCCATTCTGGTTTTCTGCTGACACAAAGTCATTCATACAAAAAATTCTGGATCCTAATCCTAAAACA
gtgtgtg
- - - - - - - - - - - - - - - - ggtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - ccatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctgc