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...tgattatgagttagtataaatttgatttttttcgccctagtgcaataatgttcacttaccattatttgcttcggtttctcactgaaatgatcttttgcagGTACTCAGCAATAGAGGATATGATGGTGCAGCAGCTGATGTTTGGTCATGTGGAGTCATCCTATATGTTCTAATGGCTGGATATCTTCCTTTTGAGGAGG
species | Glycine max |
transcript | GLYMA17G12250.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGACCTTCTTCACACCACTTGTGGGACCCCAAACTATGTTGCCCCTGAG GTACTCAGCAATAGAGGATATGATGGTGCAGCAGCTGATGTTTGGTCATGTEST: gi|254322068|gb|GR837482.1|GR837482
genomic: CTGACCTTCTTCACACCACTTGTGGGACCCCAAACTATGTTGCCCCTGAGgtaaaattgg ... tcttttgcagGTACTCAGCAATAGAGGATATGATGGTGCAGCAGCTGATGTTTGGTCATGT
EST: CTGACCTTCTTCACACCACTTGTGGGACCCCAA-CTATGTTGCCCCTGAG GTACTCAGCA-TAGAGGATATGATGGTGCAGCAGCTGATGTTTGGTCATGTEST: gi|151394038|gb|EV263909.1|EV263909
genomic: CTGACCTTCTTCACACCACTTGTGGGACCCCAAACTATGTTGCCCCTGAGgtaaaattgg ... tcttttgcagGTACTCAGCAATAGAGGATATGATGGTGCAGCAGCTGATGTTTGGTCATGT
EST: CTGACCTTCTTCACACCACTTGTGGGACCCCAAACTATGTTGCCCCTGAG GTACTCAGCAATAGAGGATATGATGGTGCAGCAGCTGATGTTTGGTCATGTEST: gi|208045634|gb|GD838936.1|GD838936
genomic: CTGACCTTCTTCACACCACTTGTGGGACCCCAAACTATGTTGCCCCTGAGgtaaaattgg ... tcttttgcagGTACTCAGCAATAGAGGATATGATGGTGCAGCAGCTGATGTTTGGTCATGT
EST: CTGACCTTCTTCACACCACTTGTGGGACCCCAAACTATGTTGCCCCTGAG GTACTCAGCAATAGAGGATATGATGGTGCAGCAGCTGATGTTTGGTCATGT
genomic: CTGACCTTCTTCACACCACTTGTGGGACCCCAAACTATGTTGCCCCTGAGgtaaaattgg ... tcttttgcagGTACTCAGCAATAGAGGATATGATGGTGCAGCAGCTGATGTTTGGTCATGT
taatgttcacttaccattatttgcttcggtttctcactgaaatgatcttttgcagGTACTCAGCAATAGAGGATATGATGGTGCAGCAGCTGATGTTTGGTCATGTGGAGTCATCCTATATGTTCTAATGGCTGGATATCTTCCTTTTGAGGAGG
ttctcac putative branch site (score: 2)
tcttttgc putative PPT
attattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattatgagttagtataaatttgatttttttcgccctagtgcaataatgttcacttaccattatttgcttcggtttctcactgaaatgatcttttgcagGTACTCAGCAATAGAGGATATGATGGTGCAGCAGCTGATGTTTGGTCATGTGGAGTCATCCTATATGTTCTAATGGCTGGATATCTTCCTTTTGAGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - cgcccta
- - - - - - - - - - - - - - - - - - - - - - - - - - cacttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcttc