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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGGCTAGCCAGACCAAGATCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTgtaagttttgatgtttatatattatggaatatgttagaggttaattcttctgaacattgataattcccaagtctgaccatttaaattagcaattgttgttgagatgctaacaaactattgttaatgatttgattttatttgttacttatgttacaatttcaccgcttctgaatcggtag

Basic information

species Glycine max
transcript GLYMA17G12250.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12250.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g05420.t01 (Vitis vinifera), 5'ss of exon 4
GTTTTGGCTAGCCAGACCAAGATCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTgtaagttttgatgtttatatattatggaatatgttagaggttaattcttctgaacattgataattcccaagtctgacca-tttaaattagcaattgttgttgagatgctaacaaactattgttaatgatttgattttatttgttacttatgttacaatttcaccgcttctgaatcggtag
|| ||||| |||||||| | ||| || || || ||||| ||||| |  ||||| |||||||||||||||||||||||  ||  | | |   |||    | | ||   | | | | || ||||| |  | |  |   |     |  ||   | |||   |  | |||  |     ||                                                                            
GTCTTGGCCAGCCAGACAACGATATATATTATTCTTGAGTTTGTCACTGGAGGAGAACTATATGATAAAATTgtaaggcttcttctattcttatatatgtacataggaaatgattat-cttctaattacttttgtgttt---gcttggtgagttttggtgtgaaatcatatcatag----------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254322068|gb|GR837482.1|GR837482
EST:     TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATT                         GTTCAGCTGGGAAAGCTTTCTGAAAATGAATCTAGGCACTACTTTCAACAA
genomic: TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTgtaagttttg ... gaatcggtagGTTCAGCTGGGAAAGCTTTCTGAAAATGAATCTAGGCACTACTTTCAACAA
EST: gi|209718606|gb|BW674732.1|BW674732
EST:     TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATT                         GTTCAGCTGGGAAAGCTTTCTGAAAATGAATCTAGGCACTACTTTCAACAA
genomic: TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTgtaagttttg ... gaatcggtagGTTCAGCTGGGAAAGCTTTCTGAAAATGAATCTAGGCACTACTTTCAACAA
EST: gi|151394038|gb|EV263909.1|EV263909
EST:     TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATT                         GTTCAGCTGGGAAAGCTTTCTGAAAATGAATCTAGGCACTACTTTCAACAA
genomic: TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTgtaagttttg ... gaatcggtagGTTCAGCTGGGAAAGCTTTCTGAAAATGAATCTAGGCACTACTTTCAACAA