1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gtgttggaaattgtggtccaagcattcctcttattttttatacgaaagttctatttctgcttaagtcttggttaaaaccatcaatttattttctcaaaagGTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAG
species | Glycine max |
transcript | GLYMA17G12250.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGGCGTTTCTGCAAACAGGGTTGGACAATTTGCAGTGGTCTTGGAG GTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACTEST: gi|58019760|gb|CX706502.1|CX706502
genomic: TTGAAGGCGTTTCTGCAAACAGGGTTGGACAATTTGCAGTGGTCTTGGAGgtagtttgtt ... ttctcaaaagGTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACT
EST: TTGAAGGCGTTTCTGCAAACAGGGTTGGACAATTTGCAGTGGTCTTGGAG GTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACTEST: gi|57574558|gb|CX547533.1|CX547533
genomic: TTGAAGGCGTTTCTGCAAACAGGGTTGGACAATTTGCAGTGGTCTTGGAGgtagtttgtt ... ttctcaaaagGTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACT
EST: TTGAAGGCGTTTCTGCAAACAGGGTTGGACAATTTGCAGTGGTCTTGGAG GTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACT
genomic: TTGAAGGCGTTTCTGCAAACAGGGTTGGACAATTTGCAGTGGTCTTGGAGgtagtttgtt ... ttctcaaaagGTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACT
aagttctatttctgcttaagtcttggttaaaaccatcaatttattttctcaaaagGTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAG
tttattttctc CT-rich tract
ttaaaaccatcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttggaaattgtggtccaagcattcctcttattttttatacgaaagttctatttctgcttaagtcttggttaaaaccatcaatttattttctcaaaagGTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAG
gtgttgg
- - - - - - - - - - -gcattcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatcaa