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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGAAATTACTGAGGGAGGTCCTCTGATAATGAATGCATTTGAGATGATTGCTTTATCACAAGGGTTGAATCTTTCACCACTATTTGATAGGCATCAGgtattgttttattttcatcttcctgacctacaatcccatggttcctttatgtctctggttgccatgtaactttttatacttccacctgcctagttgggca...

Basic information

species Glycine max
transcript GLYMA17G12250.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12250.2 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G171507_T02 (Zea mays), 5'ss of exon 12
GTCAGAAATTACTGAGGGAGGTCCTCTGATAATGAATGCATTTGAGATGATTGCTTTATCACAAGGGTTGAATCTTTCACCACTATTTGATAGGCATCAGgtattgttttattttcatcttcctgacctacaatcccatggttcctttatgtctctggttgccatgtaactttttatacttccacctgccta-gttgggca--
   |      |  || || |||||||| || |||||||| ||||||||||||||  |||| ||||| ||| |||| ||| || | ||||||||||| |||||| | |   || | | | | |    | ||     |||| |       ||  ||  |||  || || |||     |  |     | |||  | ||  ||||  
AGTAACGCACAAGGATGGTGGTCCTCTTATGATGAATGCCTTTGAGATGATTGCACTATCTCAAGGTTTGGATCTCTCAGCATTGTTTGATAGGCAACAGgtact-tcacatctccttttactcagcatagtggaccattgcatggacata-cttaggtgaccctg-aacccaagaagcacaaccatgctgatgtctggcatc

upper sequence: GLYMA17G12250.2 (Glycine max), 5'ss of exon 10
lower sequence: AT5G35410.1 (Arabidopsis thaliana), 5'ss of exon 10
GTCAGAAATTACTGAGGGAGGTCCTCTGATAATGAATGCATTTGAGATGATTGCTTTATCACAAGGGTTGAATCTTTCACCACTATTTGATAGGCATCAGgtattgttttattttcatcttcctgacctacaatcccatggttcctttatgtctctggttgccatgtaactttttatacttccacctgcctagttgggca------
   ||| |  | ||| | ||| || ||||| |||||||| |||||||||||| | ||||||||||| || ||| | ||  |||||||||| ||||  |||||| |   | ||||||   | |  | | || |   |     |||   ||       |  || |  ||| | | | || ||||   |||||   || | |       
TGTAGAGAGAAATGATGAAGGGCCCCTGATGATGAATGCCTTTGAGATGATTACCTTATCACAAGGCTTAAATTTATCTGCACTATTTGACAGGCGACAGgtagtacctgattttctattactggtcatagagatctccatttcgaataaaa----gaatgtcg-gtagcatct-attcttcagactgcccgttttgactgcctta

upper sequence: GLYMA17G12250.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv11s0016g05420.t01 (Vitis vinifera), 5'ss of exon 11
GTCAGAAATTACTGAGGGAGGTCCTCTGATAATGAATGCATTTGAGATGATTGCTTTATCACAAGGGTTGAATCTTTCACCACTATTTGATAGGCATCAGgtattgttttattttcatcttcctgacctacaatcccatggttcctttatgtctctggttgccatgtaactttttatac-ttccacctgccta--gttgggca
||||| || || |||   ||||||| |||||||||||||||||||||||||| |  |||| |||||||||||||| ||| |||| ||||| || |  ||||||  ||  ||||   || ||       |   |  ||||  |   | | | | |      |  ||  || |||   | |  |  |  |   ||   ||| |  
GTCAGGAAATAATGACACAGGTCCTTTGATAATGAATGCATTTGAGATGATTACCCTATCCCAAGGGTTGAATCTATCAGCACTTTTTGACAGACGACAGgtacagtgatatt---attttaggatttttgcactccattatatttctttatattccagcgtgattcaagtttgactgcacttaatttatttacaattgtgtc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7693020|gb|AW761119.1|AW761119
EST:     TTGCTNTATCACAANGGTTGAATCTTTCACCACTATTTGATAGGCATCAG                         GATTATGTAAAGCGGCAAACTCGTTTTGTCTCCCCGTAA-CCAGCAAAAGT
genomic: TTGCTTTATCACAAGGGTTGAATCTTTCACCACTATTTGATAGGCATCAGgtattgtttt ... gttctaacagGATTATGTAAAGCGGCAAACTCGTTTTGTCTCCC-GTAAACCAGCAAAAGT
EST: gi|58019760|gb|CX706502.1|CX706502
EST:     ATCACAAGGGTTGAATCTTTCACCACTATTTGATAGGCATCAG                         GATTATGTAAAGCGGCAAACTCGTTTTGTCTCCCGTAAACCAGCAAAAGTT
genomic: ATCACAAGGGTTGAATCTTTCACCACTATTTGATAGGCATCAGgtattgtttt ... gttctaacagGATTATGTAAAGCGGCAAACTCGTTTTGTCTCCCGTAAACCAGCAAAAGTT
EST: gi|57574558|gb|CX547533.1|CX547533
EST:     TGCTTTATCACAAGGG-TGAATCTTTTCACCACTATTTGATAGGCATCAG                         GATTATGTAAAGCGGCAAACTCGTTTTGTCTCCCGTAAACCAGCAAAAGTT
genomic: TGCTTTATCACAAGGGTTGAATC-TTTCACCACTATTTGATAGGCATCAGgtattgtttt ... gttctaacagGATTATGTAAAGCGGCAAACTCGTTTTGTCTCCCGTAAACCAGCAAAAGTT