1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGAGGCTACATCAATTAAATTGAAGAATGAGAGGATAAATGATTTGGAGGAACAGgtattgcaactagcttcaatgattctttgtacagaagttttccaaatttattgtcatgtaatgggttatatgatgatgccacag
species | Glycine max |
transcript | GLYMA17G12120.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTACATCAATTAAATTGAAGAATGAGAGGATAAATGATTTGGAGGAACAG ATTAGAGATATCAAGATTTTTCTTGAAGCGCAAAAAACAATTGATAAAATGEST: gi|193433219|gb|FK393911.1|FK393911
genomic: CTACATCAATTAAATTGAAGAATGAGAGGATAAATGATTTGGAGGAACAGgtattgcaac ... gatgccacagATTAGAGATATCAAGATTTTTCTTGAAGCGCAAAAAACAATTGATAAAATG
EST: GAAGAATGAGAGGATAAATGATTTGGAGGAACAG ATTAGAGATATCAAGATTTTTCTTGAAGCGCAAAAAACAATTGATAAAATGEST: gi|21602703|gb|BQ613034.1|BQ613034
genomic: GAAGAATGAGAGGATAAATGATTTGGAGGAACAGgtattgcaac ... gatgccacagATTAGAGATATCAAGATTTTTCTTGAAGCGCAAAAAACAATTGATAAAATG
EST: CTACATCAATTAAATTGAAGAATGAGAGGATAAATGATTTGGAGGAACAG ATTAGAGATATCAAGATTTTTCTTGAAGCGCAAAAAACAATTGATAAAATG
genomic: CTACATCAATTAAATTGAAGAATGAGAGGATAAATGATTTGGAGGAACAGgtattgcaac ... gatgccacagATTAGAGATATCAAGATTTTTCTTGAAGCGCAAAAAACAATTGATAAAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGCTACATCAATTAAATTGAAGAATGAGAGGATAAATGATTTGGAGGAACAGgtattgcaactagcttcaatgattctttgtacagaagttttccaaatttattgtcatgtaatgggttatatgatgatgccacag
- - - - - - - - - TTGAAG
- - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - GGAGGA