1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAATTTTCACTGTATGTCACTTGAAGGAGAATGTGGTATGTGTGAATGCCGTGAAGATTTAGGAATTAATGGGGCCCTTTTCAACAGCAAAGTTGAAACGgtatggttctcataaatcacatgaaactcttgaatgtctttttgccttttatttatgaataattctaaatcctcctacatttctatctactaatctccta...
species | Glycine max |
transcript | GLYMA17G12120.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTGAAGATTTAGGAATTAATGGGGCCCTTTTCAACAGCAAAGTTGAAACG ATTGTGGATGAATACAACCGTCTTCTTACATCTCAGTTGGAGACACAAAGAEST: gi|193368811|gb|FK335177.1|FK335177
genomic: GTGAAGATTTAGGAATTAATGGGGCCCTTTTCAACAGCAAAGTTGAAACGgtatggttct ... atgagaacagATTGTGGATGAATACAACCGTCTTCTTACATCTCAGTTGGAGACACAAAGA
EST: GGGGCCCTTTTCAACAGCAAAGTTGAAACG ATTGTGGATGAATACAACCGTCTTCTTACATCTCAGTTGGAGACACAAAGAEST: gi|208318541|gb|GE111078.1|GE111078
genomic: GGGGCCCTTTTCAACAGCAAAGTTGAAACGgtatggttct ... atgagaacagATTGTGGATGAATACAACCGTCTTCTTACATCTCAGTTGGAGACACAAAGA
EST: GTGAAGATTTAGGAATTAATGGGGCCCTTTTCAACAGCAAAGTTGAAACG ATTGTGGATGAATACAACCGTCTTCTTACATCTCAGTTGGAGACACAAAGA
genomic: GTGAAGATTTAGGAATTAATGGGGCCCTTTTCAACAGCAAAGTTGAAACGgtatggttct ... atgagaacagATTGTGGATGAATACAACCGTCTTCTTACATCTCAGTTGGAGACACAAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTTTCACTGTATGTCACTTGAAGGAGAATGTGGTATGTGTGAATGCCGTGAAGATTTAGGAATTAATGGGGCCCTTTTCAACAGCAAAGTTGAAACGgtatggttctcataaatcacatgaaactcttgaatgtctttttgccttttatttatgaataattctaaatcctcctacatttctatctactaatctccta
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG