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gtattgcaactagcttcaatgattctttgtacagaagttttccaaatttattgtcatgtaatgggttatatgatgatgccacagATTAGAGATATCAAGATTTTTCTTGAAGCGCAAAAAACAATTGATAAAATGTCAGATTCAAATGGGATCAAGGAGGGAACAGTCCTACCGGTGGCTTATG
species | Glycine max |
transcript | GLYMA17G12120.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTACATCAATTAAATTGAAGAATGAGAGGATAAATGATTTGGAGGAACAG ATTAGAGATATCAAGATTTTTCTTGAAGCGCAAAAAACAATTGATAAAATGEST: gi|193433219|gb|FK393911.1|FK393911
genomic: CTACATCAATTAAATTGAAGAATGAGAGGATAAATGATTTGGAGGAACAGgtattgcaac ... gatgccacagATTAGAGATATCAAGATTTTTCTTGAAGCGCAAAAAACAATTGATAAAATG
EST: GAAGAATGAGAGGATAAATGATTTGGAGGAACAG ATTAGAGATATCAAGATTTTTCTTGAAGCGCAAAAAACAATTGATAAAATGEST: gi|21602703|gb|BQ613034.1|BQ613034
genomic: GAAGAATGAGAGGATAAATGATTTGGAGGAACAGgtattgcaac ... gatgccacagATTAGAGATATCAAGATTTTTCTTGAAGCGCAAAAAACAATTGATAAAATG
EST: CTACATCAATTAAATTGAAGAATGAGAGGATAAATGATTTGGAGGAACAG ATTAGAGATATCAAGATTTTTCTTGAAGCGCAAAAAACAATTGATAAAATG
genomic: CTACATCAATTAAATTGAAGAATGAGAGGATAAATGATTTGGAGGAACAGgtattgcaac ... gatgccacagATTAGAGATATCAAGATTTTTCTTGAAGCGCAAAAAACAATTGATAAAATG
tacagaagttttccaaatttattgtcatgtaatgggttatatgatgatgccacagATTAGAGATATCAAGATTTTTCTTGAAGCGCAAAAAACAATTGATAAAATGTCAGATTCAAATGGGATCAAGGAGGGAACAGTCCTACCGGTGGCTTATG
ttttccaaatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgcaactagcttcaatgattctttgtacagaagttttccaaatttattgtcatgtaatgggttatatgatgatgccacagATTAGAGATATCAAGATTTTTCTTGAAGCGCAAAAAACAATTGATAAAATGTCAGATTCAAATGGGATCAAGGAGGGAACAGTCCTACCGGTGGCTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG