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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatattatcatttcttctattttcactgataacttgtgtatgaaactgaaagcccctaattaatatattaacaagttgcaatttattgtccttgatatgtcatttgcttttgttttatcggggaagactttaatgccgtgatttttcttttttatctagATATAAAGAAGGACATGCTATTCAGCATTGGAAAGATACTCAGCATTGCTATTCTCTTGATTTTAAAACACAGCAAATTTGGGATTATGTGGGTGACAAT

Basic information

species Glycine max
transcript GLYMA17G12120.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12120.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os04g55480.1 (Oryza sativa), 3'ss of exon 6
gtaacatattatcatttcttctattttcactgataacttgtgtatgaaactgaaagcccctaattaatatatt--aacaagttgcaa--tttattgtccttgatatgtcatttgcttttgttttatcggggaagactttaatgccgtgatttttcttttttatctagATATAAAGAAGGACATGCTATTCAGCATTGGAAAGATACTCAGCATTGCTATTCTCTTGATTTTAAAACACAGCAAATTTGGGATTATGTGGGTGACAAT
                                         |||||  |||     |  |||||| |  | ||  | ||  |||| |   |  ||||  || |||        |        |||  ||  | || |    |   |||| |||  || ||  |  || ||| ||||||| ||||| |||  ||| |||||||| |||||||| |||||||| ||||||||  |||| || |   ||||||||||||| ||||||| |
-----------------------------------------gtatgctact-----ctgctaattgaatttttggagcattttgcgaatctctttgtatttaataatctgaaggaaagaaagttaatggc-atgattactgt-ttgtgaatttctttgttattacagGTATGAAGAAGGCCATGCAATTAGGCACTGGAAAGAAACTCAGCACTGCTATTCACTTGATTTGGAAACTCAACGTGTTTGGGATTATGTTGGTGACAGT

upper sequence: GLYMA17G12120.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G066169_T03 (Zea mays), 3'ss of exon 6
gtaacatattatcatttcttctattttcactgataacttgtgtatgaaactgaaagcccctaattaatatattaacaagttgcaatttattgtccttgatatgtcatttgcttttgttttatcggggaagactttaatgccgtgatttttcttttttatctagATATAAAGAAGGACATGCTATTCAGCATTGGAAAGATACTCAGCATTGCTATTCTCTTGATTTTAAAACACAGCAAATTTGGGATTATGTGGGTGACAAT
                                                         |  || ||| ||    || || |   |||  |  |  |||| ||| |  ||   ||||  |   | |   |  |   |  | || | |||    |   |  ||||| ||| ||||||||||||| |  ||||| |||||||||||||||||||||||||| || |||||  ||||||| |   ||||||| ||||| ||||||| |
--------------------------------------------------------acattagttattaccagaagaaata--aatacacag--cttggtat-ttgttgaatttttctacgtggccaatcaacct--tacccttattgacttgcatattctagGTATCAAGAAGGACATGCGAAACAGCACTGGAAAGATACTCAGCATTGCTATTCGCTAGATTTGGAAACACAACGTGTTTGGGACTATGTTGGTGACAGT

upper sequence: GLYMA17G12120.1 (Glycine max), 3'ss of exon 4
lower sequence: AT2G42160.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaacatattatcatttcttctattttcactgataacttgtgtatgaaactgaaagcccctaattaatatattaacaagttgcaatttattgtccttgatatgtcatttgcttttgttttatcggggaagactttaatgccgtgatttttctttttta--tctagATATAAAGAAGGACATGCTATTCAGCATTGGAAAGATACTCAGCATTGCTATTCTCTTGATTTTAAAACACAGCAAATTTGGGATTATGTGGGTGACAAT
                                            | |  ||       |||   ||| || |||   |     |||||||  |||     |  || |||   ||   ||||  || | |   |      | |||  || | ||||  |  | |||||| || ||||| ||| |||||  ||| |||||||| || || || |||||||||||||||||   |||||| ||||| ||||||||||| |||||||  
-------------------------------------------gtaattcttggtttgcctttctaagat-ttagttaacctgaatttat-atcc-----acatcttttatcttc--tttagaggtggaagttcattcacagtggattctgttttccaattttagATACAAGGAAGGGCATTCTATTAGGCACTGGAAAGAAACGCATCACTGCTATTCTCTTGATTTGCGAACACAACAAATCTGGGATTATGTTGGTGACAGC

upper sequence: GLYMA17G12120.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv11s0016g05600.t01 (Vitis vinifera), 3'ss of exon 5
gtaacatattatcatttcttctattttcactgataacttgtg---tatgaaactgaaagcccctaattaatatattaacaagttgcaatttattgtccttgatatgtcatttgcttttgttttatcggggaagactttaatgccgtgatttttcttttttatctagATATAAAGAAGGACATGCTATTCAGCATTGGAAAGATACTCAGCATTGCTATTCTCTTGATTTTAAAACACAGCAAATTTGGGATTATGTGGGTGACAAT
|||| | ||||   ||| ||||  || |  |  | |||  |    | ||   ||||| |      |  || |||||    ||||    || |||    |   |     | || || |   |||        |   | || |      |  ||| |  |   | ||||||||||||||| |||||||||   || ||||||||| | || |||| |||||| ||||| ||  ||| ||| ||  ||||||||||||| ||||| | |
gtaa-acattaatgtttgttctgcttcctattgtgactgctaatttctgtttctgaatggt----accaacatattctgtagttattgttcatttgattctctgctatactttctctccctttg-------aatttctacttattgaagctttttgctgggtttagATATAAAGAAGGCCATGCTATTAGACACTGGAAAGATGCGCAACATTCCTATTCCCTTGACTTAGAAAAACAACAGGTTTGGGATTATGTTGGTGATAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttttgttttatcggggaagactttaatgccgtgatttttcttttttatctagATATAAAGAAGGACATGCTATTCAGCATTGGAAAGATACTCAGCATTGCTATTCTCTTGATTTTAAAACACAGCAAATTTGGGATTATGTGGGTGACAAT
                       ctttaat  putative branch site (score: 4)
                                     tttttcttttttatct  putative PPT
                                    atttttcttttttatc  TA-rich tract