1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtattatagttacataatggcccacattttaaaatgttattcttaaactttgacatcccgtgtttttcttctttatattgattttatcttgtcatgcagCTGTTTGCTGCTAACCAAAAGAAACCAGCTGATATCATCAGCATATTTGTTGCAAACAGAAGCAAGCTTCTTAGACTTTTGGGTGACTTAAAAACCGATA
species | Glycine max |
transcript | GLYMA17G01180.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGTCAAGCAAGAGCATACAGATAGAAGCATTTCATGTTTTCAAG CTGTTTGCTGCTAACCAAAAGAAACCAGCTGATATCATCAGCATATTTGTTEST: gi|7796054|gb|AW781451.1|AW781451
genomic: GAGTCAAGCAAGAGCATACAGATAGAAGCATTTCATGTTTTCAAGgtattatagt ... tgtcatgcagCTGTTTGCTGCTAACCAAAAGAAACCAGCTGATATCATCAGCATATTTGTT
EST: GAGTCAAAGCA-GAGCATACAGATAGAAGCATTTCATGCGTTCAAG CTGGTTGCTGCTAACEST: gi|31461978|gb|CD404006.1|CD404006
genomic: GAGTCAA-GCAAGAGCATACAGATAGAAGCATTTCATGTTTTCAAGgtattatagt ... tgtcatgcagCTGTTTGCTGCTAAC
EST: AAGAGCATACAGATAGAAGCATTTCATGTTTTCAAG CTGTTTGCTGCTAACCAAAAGAAACCAGCTGATATCATCAGCATATTTGTTEST: gi|17400886|gb|BM177668.1|BM177668
genomic: AAGAGCATACAGATAGAAGCATTTCATGTTTTCAAGgtattatagt ... tgtcatgcagCTGTTTGCTGCTAACCAAAAGAAACCAGCTGATATCATCAGCATATTTGTT
EST: GAGTCAAGCAAGAGCATACAGATAGAAGCATTTCATGTTTTCAAG CTGTTTGCTGCTAACCAAAAGAAACCAGCTGATATCATCAGCATATTTGTT
genomic: GAGTCAAGCAAGAGCATACAGATAGAAGCATTTCATGTTTTCAAGgtattatagt ... tgtcatgcagCTGTTTGCTGCTAACCAAAAGAAACCAGCTGATATCATCAGCATATTTGTT
aaactttgacatcccgtgtttttcttctttatattgattttatcttgtcatgcagCTGTTTGCTGCTAACCAAAAGAAACCAGCTGATATCATCAGCATATTTGTTGCAAACAGAAGCAAGCTTCTTAGACTTTTGGGTGACTTAAAAACCGATA
tattgat putative branch site (score: 3)
ttttatctt CT-rich tract
tttttcttctttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattatagttacataatggcccacattttaaaatgttattcttaaactttgacatcccgtgtttttcttctttatattgattttatcttgtcatgcagCTGTTTGCTGCTAACCAAAAGAAACCAGCTGATATCATCAGCATATTTGTTGCAAACAGAAGCAAGCTTCTTAGACTTTTGGGTGACTTAAAAACCGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT