1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gttgtagaataaaagacagcctaggtatgatctttctttctagtatgacttttgtgagttgtgacttgtgatgctgtaattattattggctttatatcagATATGTTCTGGACTCACCTCATATGAAGAAGTTTTTTGACTACATTCAGCTTCCAAATTTTGACATAGCTGCAGATGCCGCAGCAACTTTTAAG
species | Glycine max |
transcript | GLYMA17G01180.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTAGAAAAGATGCCACTCAGATTGTTGCAAATTTACAGAGGCAGCAGGTTCAGTCCAAGCTCATCGCCTCTGATTACTTGGATACTAATTTGGATCTTATGGATGTCEST: gi|7796054|gb|AW781451.1|AW781451
genomic: GCTAGAAAAGATGCCACTCAGATTGTTGCAAATTTACAGAGGCAGCAGGTTCAGTCCAAGCTCATCGCCTCTGATTACTTGGATACTAATTTGGATCTTATGGATGTC
EST: CACTACGGTGCAATGTTGAGGGAGTGCATAAGACACCATATTGTTGCAAA ATATGTTCTGGACTCACCTCATATGAAGAAGTTTTTTGACTACATTCAGCTEST: gi|151410067|gb|EV279875.1|EV279875
genomic: CACTACGGTGCAATGTTGAGGGAGTGCATAAGACACCAGATTGTTGCAAAgtaaggggga ... tttatatcagATATGTTCTGGACTCACCTCATATGAAGAAGTTTTTTGACTACATTCAGCT
EST: GCTAGAAAAGATGCCACTCAGATTGTTACAAATTTACAGAGGCAGCAGGTTCAGTCCAAGCTCATCGCCTCTGATTACTTGGATACTAATTTTGGACCTTATGGATGT
genomic: GCTAGAAAAGATGCCACTCAGATTGTTGCAAATTTACAGAGGCAGCAGGTTCAGTCCAAGCTCATCGCCTCTGATTACTTGGATACTAATTT-GGATCTTATGGATGT
tgacttttgtgagttgtgacttgtgatgctgtaattattattggctttatatcagATATGTTCTGGACTCACCTCATATGAAGAAGTTTTTTGACTACATTCAGCTTCCAAATTTTGACATAGCTGCAGATGCCGCAGCAACTTTTAAG
taattattattggctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtagaataaaagacagcctaggtatgatctttctttctagtatgacttttgtgagttgtgacttgtgatgctgtaattattattggctttatatcagATATGTTCTGGACTCACCTCATATGAAGAAGTTTTTTGACTACATTCAGCTTCCAAATTTTGACATAGCTGCAGATGCCGCAGCAACTTTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG