1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gagcctatcagtttatcttgtagtgctttaaattgtgttgggtttatctcattatagttggttaccatccattactcattgtctttgtttttactttcagTTTTTTGATGAATATAACTCTAAACTGTTGGAATCTTCCAATTATATTACAAGGCGCCAAGCTGTCAAG
species | Glycine max |
transcript | GLYMA17G01180.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAGCAATTATTATGAATGG TTTNNNGATGAATATAACTCTAAACTGTTGGAATCTTCCAATTATATTACAEST: gi|8284716|gb|BE022258.1|BE022258
genomic: TAGCAATTATTATGAATGGgtaggttccc ... ttactttcagTTTTTTGATGAATATAACTCTAAACTGTTGGAATCTTCCAATTATATTACA
EST: CAAGGCATAAATCTACTGTAGCTGATTTCCTTAGCAATTATTATGAATGG TTTTTTGATGAATATAACTCTAAACTGTTGGAATCTTCCAATTATATTACAEST: gi|7796054|gb|AW781451.1|AW781451
genomic: CAAGGCATAAATCTACTGTAGCTGATTTCCTTAGCAATTATTATGAATGGgtaggttccc ... ttactttcagTTTTTTGATGAATATAACTCTAAACTGTTGGAATCTTCCAATTATATTACA
EST: CAAGGCATAAATCTACTGTAGCTGATTTCCTTAGCAATTATTATGAATGG TTTTTTGATGAATATAACTCTAAACTGTTGGAATCTTCCAATTATATTACAEST: gi|17400886|gb|BM177668.1|BM177668
genomic: CAAGGCATAAATCTACTGTAGCTGATTTCCTTAGCAATTATTATGAATGGgtaggttccc ... ttactttcagTTTTTTGATGAATATAACTCTAAACTGTTGGAATCTTCCAATTATATTACA
EST: CAAGGCATAAATCTACTGTAGCTGATTTCCTTAGCAATTATTATGAATGG TTTTTTGATGAATATAACTCTAAACTGTTGGAATCTTCCAATTATATTACA
genomic: CAAGGCATAAATCTACTGTAGCTGATTTCCTTAGCAATTATTATGAATGGgtaggttccc ... ttactttcagTTTTTTGATGAATATAACTCTAAACTGTTGGAATCTTCCAATTATATTACA
atctcattatagttggttaccatccattactcattgtctttgtttttactttcagTTTTTTGATGAATATAACTCTAAACTGTTGGAATCTTCCAATTATATTACAAGGCGCCAAGCTGTCAAG
tctttgtttttacttt CT-rich tract
tttgtttttacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagcctatcagtttatcttgtagtgctttaaattgtgttgggtttatctcattatagttggttaccatccattactcattgtctttgtttttactttcagTTTTTTGATGAATATAACTCTAAACTGTTGGAATCTTCCAATTATATTACAAGGCGCCAAGCTGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG