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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGAAAACACAGACATGGCTTTACACTACGGTGCAATGTTGAGGGAGTGCATAAGACACCAGATTGTTGCAAAgtaagggggaacgaccaaatcaattcaattttgtgtttttctcttttaatttcaaatttaaatcagtcaatgttgaaaggtggaaacgcaatcattttgg...

Basic information

species Glycine max
transcript GLYMA17G01180.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01180.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G47540.1 (Arabidopsis thaliana), 5'ss of exon 4
ATATGAAAACACAGACATGGCTTTACACTACGGTGCAATGTTGAGGGAGTGCATAAGACACCAGATTGTTGCAAAgtaagggggaacgaccaaatcaattcaattttgtgtttttctcttttaatttcaaatttaaatcagtcaatgttgaaaggtgga--aacgcaatcattttgg------
 |  || ||||||||||||||||||||||| ||||| ||||| |||||||| ||  | || |||||||| || |||| ||    ||       ||    |  |||||  |   |  |    |||||    ||| | |  | | |  |   |   ||  |  |||  |||   |||||      
CTTCGAGAACACAGACATGGCTTTACACTATGGTGCTATGTTTAGGGAGTGTATCCGTCATCAGATTGTGGCTAAgtgagcc--aatcgtttcattttcttcattttacgaccta-tggagtaattatggattcagag-aataacggaaaatgtgtttactaacttaatttctttggattcag

upper sequence: GLYMA17G01180.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G17270.1 (Arabidopsis thaliana), 5'ss of exon 4
ATATGAAAACACAGACATGGCTTTACACTACGGTGCAATGTTGAGGGAGTGCATAAGACACCAGATTGTTGCAAAgtaagggggaacgaccaaatcaattcaattttgtgtttttctcttttaatttcaaatttaaa-----------tcagtcaatgttgaaaggtggaaacgcaatcattttgg---------
 | ||||||||| || ||||| |||||||| ||| | ||||| || ||||||||  | || |||||||||||||||| ||    ||      | |   ||  |||  | | ||   || | ||  ||  |||  | |           ||  || |  ||  |  ||| ||||    ||  |||           
GTTTGAAAACACCGATATGGCGTTACACTATGGTACTATGTTTAGAGAGTGCATCCGTCATCAGATTGTTGCAAAgtgagca--aatcttatattttctttgattacgagattaaatcctatatgtttcaatccataaagagacaatctctatcgaatttatatagtgaaaactgcttctctttctatggttcag

upper sequence: GLYMA17G01180.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0405g00020.t01 (Vitis vinifera), 5'ss of exon 4
ATATGAAAACACAGACATGGCTTTACACTACGGTGCAATGTTGAGGGAGTGCATAAGACACCAGATTGTTGCAAAgtaagggggaacgaccaaatcaattcaattttgtgtttttctcttttaatttcaaatttaaatcagtcaatgttgaaaggtggaaacgcaatcattttgg--
 ||||| |||||||||||||||||||| || ||||||||| |||| ||||||||| | || |||| |||||| | |||||    || || ||     |    || | ||  ||   |  || ||  |  || ||  |  ||  |       |   |     |  ||  | ||     
TTATGACAACACAGACATGGCTTTACATTATGGTGCAATGCTGAGAGAGTGCATACGCCATCAGACTGTTGCCAGgtaagctaaaatgaacagg--gacatcatctggtaattccattcttaaagattgaacttttacaagaaatgaaattactttatcttcctaaatagttaccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8284716|gb|BE022258.1|BE022258
EST:     GCTAGAAAAGATGCCACTCAGATTGTTGCAAATTTACAGAGGCAGCAGGTTCAGTCCAAGCTCATCGCCTCTGATTACTTGGATACTAATTTGGATCTTATGGATGTC
genomic: GCTAGAAAAGATGCCACTCAGATTGTTGCAAATTTACAGAGGCAGCAGGTTCAGTCCAAGCTCATCGCCTCTGATTACTTGGATACTAATTTGGATCTTATGGATGTC
EST: gi|7796054|gb|AW781451.1|AW781451
EST:     CACTACGGTGCAATGTTGAGGGAGTGCATAAGACACCATATTGTTGCAAA                         ATATGTTCTGGACTCACCTCATATGAAGAAGTTTTTTGACTACATTCAGCT
genomic: CACTACGGTGCAATGTTGAGGGAGTGCATAAGACACCAGATTGTTGCAAAgtaaggggga ... tttatatcagATATGTTCTGGACTCACCTCATATGAAGAAGTTTTTTGACTACATTCAGCT
EST: gi|151410067|gb|EV279875.1|EV279875
EST:     GCTAGAAAAGATGCCACTCAGATTGTTACAAATTTACAGAGGCAGCAGGTTCAGTCCAAGCTCATCGCCTCTGATTACTTGGATACTAATTTTGGACCTTATGGATGT
genomic: GCTAGAAAAGATGCCACTCAGATTGTTGCAAATTTACAGAGGCAGCAGGTTCAGTCCAAGCTCATCGCCTCTGATTACTTGGATACTAATTT-GGATCTTATGGATGT