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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaattcattaacacagacatgacattttttttatttttatttttttttaattgcgtggctcctgtttcttttgtgttgatgctgcgatgcgatttttgcagGCTAGAAAAGATGCCACTCAGATTGTTGCAAATTTACAGAGGCAGCAGGTTCAGTCCAAGCTCATCGCCTCTGATTACTTGGATACTAATTTGGATCTTA

Basic information

species Glycine max
transcript GLYMA17G01180.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298182653|gb|HO031388.1|HO031388
EST:     ACAACACCTTACGCCTCCTTATCCAATATCTTCCCAAACTCAACTTGGAG                         GCTAGAAAAGATGCC
genomic: ACAACACCTTACGCCTCCTTATCCAATATCTTCCCAAACTCAACTTGGAGgcaattcatt ... atttttgcagGCTAGAAAAGATGCC
EST: gi|8284716|gb|BE022258.1|BE022258
EST:     ACAACACCTTACGCCTCCTTATCCAATATCTTCCCAAACTCAACTTGGAG                         GCTAGAAAAGATGCCACTCAGATTGTTGCAAATTTACAGAGGCAGCAGGTT
genomic: ACAACACCTTACGCCTCCTTATCCAATATCTTCCCAAACTCAACTTGGAGgcaattcatt ... atttttgcagGCTAGAAAAGATGCCACTCAGATTGTTGCAAATTTACAGAGGCAGCAGGTT
EST: gi|213617371|gb|DB965214.1|DB965214
EST:     ACAACACCTTACGCCTCCTTATCCAATATCTTCCCAAACTCAACTTGGAG                         GCTAGAAAAGATGCCACTCAGATTGTTGCAAATTTACA
genomic: ACAACACCTTACGCCTCCTTATCCAATATCTTCCCAAACTCAACTTGGAGgcaattcatt ... atttttgcagGCTAGAAAAGATGCCACTCAGATTGTTGCAAATTTACA
EST: gi|151410067|gb|EV279875.1|EV279875
EST:     ACAACACCTTACGCCTCCTTATCCAATATCTTCCCAAACTCAACTTGGAG                         GCTAGAAAAGATGCCACTCAGATTGTTACAAATTTACAGAGGCAGCAGGTT
genomic: ACAACACCTTACGCCTCCTTATCCAATATCTTCCCAAACTCAACTTGGAGgcaattcatt ... atttttgcagGCTAGAAAAGATGCCACTCAGATTGTTGCAAATTTACAGAGGCAGCAGGTT
EST: gi|192295830|gb|FG992626.1|FG992626
EST:     ACAACACCTTACGCCTCCTTATCCAATATCTTCCCAAACTCAACTTGGAG                         GCTAGAAAAGATGCCACTCAGATTGTTGCAAATTTACAGAGGCAGCAGGTT
genomic: ACAACACCTTACGCCTCCTTATCCAATATCTTCCCAAACTCAACTTGGAGgcaattcatt ... atttttgcagGCTAGAAAAGATGCCACTCAGATTGTTGCAAATTTACAGAGGCAGCAGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattgcgtggctcctgtttcttttgtgttgatgctgcgatgcgatttttgcagGCTAGAAAAGATGCCACTCAGATTGTTGCAAATTTACAGAGGCAGCAGGTTCAGTCCAAGCTCATCGCCTCTGATTACTTGGATACTAATTTGGATCTTA
                                              tttttgc  CT-rich tract
                  tttctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcaattcattaacacagacatgacattttttttatttttatttttttttaattgcgtggctcctgtttcttttgtgttgatgctgcgatgcgatttttgcagGCTAGAAAAGATGCCACTCAGATTGTTGCAAATTTACAGAGGCAGCAGGTTCAGTCCAAGCTCATCGCCTCTGATTACTTGGATACTAATTTGGATCTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA