Sequence
atgc intronic sequence ATGC exonic sequenceTACTGTGCTATGGGACTTGGCTGGGTTGGACTGGATTTTCGAGGCTTGCTCCCATCACTTTTTGAAGAgtaaaacatgctccttttcatgatctattaggataaattgtacttaaagcattttctaatatataagatgttttctttacag
Basic information
species | Glycine max |
transcript | GLYMA16G22880.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G22880.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os12g35290.1 (Oryza sativa), 5'ss of exon 8
TACTGTGCTATGGGACTTGGCTGGGTTGGACTGGATTTTCGAGGCTTGCTCCCATCACTTTTTGAAGAgtaaaacatgctccttttcatgatctattaggataa----attgtacttaaagcattttctaatatataagatgttttctttacag
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TATTGTGCAATGGGCCTTGGCTTGGTTGGACTGGATTTCCGTGGCTTACTTCCACCAATTTTTGAAAAgtaattagcattttcttgtaaattttattagagtattcacgctgcaaacagaacctattcttattgatgatgttatctgcatgcag
upper sequence: GLYMA16G22880.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0008g01350.t01 (Vitis vinifera), 5'ss of exon 8
TACTGTGCTATGGGACTTGGCTGGGTTGGACTGGATTTTCGAGGCTTGCTCCCATCACTTTTTGAAGAgtaaa-acatgctc----cttttcatgatctattaggataaattgtacttaaagcattttctaatatataagatgttttctttacag
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TATTGTGCAATGGGACTTGGTTGGGTTGGACTGGATTTTCGGGGATTGCTCCCATCTCTTTTTGAAGAgttagtatatctttaaattttttactgatactattgatcgacaagcacctttcctatttta-acaattcaatttggccgctttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22525707|gb|BU084518.1|BU084518EST: GGCTGGGTTGGACTGGATTTTCGAGGCTTGCTCCCATCACTTTTTGAAGA AGCTGTTCTCAACTTATTCTCCAAAAATATGAGTACTGCAGTAGAGAATTT
genomic: GGCTGGGTTGGACTGGATTTTCGAGGCTTGCTCCCATCACTTTTTGAAGAgtaaaacatg ... ttctttacagAGCTGTTCTCAACTTATTCTCCAAAAATATGAGTACTGCAGTAGAGAATTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACTGTGCTATGGGACTTGGCTGGGTTGGACTGGATTTTCGAGGCTTGCTCCCATCACTTTTTGAAGAgtaaaacatgctccttttcatgatctattaggataaattgtacttaaagcattttctaatatataagatgttttctttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA