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...tttgaatttataaccttgtgcagacgacccaagcattcaccacaagttcaaaccccagttgctttctataatactgattacctttaaattcaatttatagGTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGAGCAACTCTTGTTATGGATGCAAAGAATGTATATGATGGAATCAGCCGCC
species | Glycine max |
transcript | GLYMA16G22880.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GATCTAACGAGTCAGGACTTTTCCGCTCACTCTGCCGGGCATTTATTGAG GTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGAEST: gi|193359604|gb|FK324661.1|FK324661
genomic: GATCTAACGAGTCAGGACTTTTCCGCTCACTCTGCCGGGCATTTATTGAGgtattttgta ... caatttatagGTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGA
EST: GCCGGGCATTTATTTGTAG GTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGEST: gi|208140825|gb|GD935223.1|GD935223
genomic: GCCGGGCATTTA-TTG-AGgtattttgta ... caatttatagGTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGG
EST: GCCGGGCATTTATTGAG GTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGAEST: gi|193477017|gb|FK439108.1|FK439108
genomic: GCCGGGCATTTATTGAGgtattttgta ... caatttatagGTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGA
EST: CATTTATTGAG GTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGAEST: gi|208153773|gb|GD951830.1|GD951830
genomic: CATTTATTGAGgtattttgta ... caatttatagGTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGA
EST: CATTTATTGAG GTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGAEST: gi|208283656|gb|GE082412.1|GE082412
genomic: CATTTATTGAGgtattttgta ... caatttatagGTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGA
EST: CATTTATTGAG GTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGA
genomic: CATTTATTGAGgtattttgta ... caatttatagGTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGA
gttcaaaccccagttgctttctataatactgattacctttaaattcaatttatagGTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGAGCAACTCTTGTTATGGATGCAAAGAATGTATATGATGGAATCAGCCGCC
tactgat putative branch site (score: 2)
attacctttaaattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgaatttataaccttgtgcagacgacccaagcattcaccacaagttcaaaccccagttgctttctataatactgattacctttaaattcaatttatagGTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGAGCAACTCTTGTTATGGATGCAAAGAATGTATATGATGGAATCAGCCGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - cttgtgc
- - - - - - - - - - - - cgaccca
- - - - - - - - - - - - - - - - gcattca
- - - - - - - - - - - - - - - - - - - -ccacaag
- - - - - - - - - - - - - - - - - - - - - - - -tcaaacc