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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttatgcagtgattatatttaatatgcaaagaaatgccacttgatttttcttgaaaaatgtttctgtatgtagtttcttattactgcatcttcctttgctagTTACCAGAATGCCTTCGCATTATTGGATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTG

Basic information

species Glycine max
transcript GLYMA16G22880.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G22880.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G11980.1 (Arabidopsis thaliana), 3'ss of exon 5
-------gtttatgcagtgattatatttaatatgcaaagaaatgccacttgatttttcttgaaaaatgtttctgtatgtagtttcttattactgcatcttcctttgctagTTACCAGAATGCCTTCGCATTATTGGATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTG
|| || |||| |||| ||| ||| || || | || || ||| || | | ||| || ||| | || | ||||||||||||| || |||||||||||||| ||||| |||||||| || ||| | ||||||| |||||| || | |
gtttcatgtgaatacagtttttatttttggtattcagt-aactatggaatggttaagcttagcaatcaaga--aggctcaatatctggttgatgc---tctctgtttcagTTACCAGAATGTCTCCGCATTATTGGATACTTACGCCGAATAGGTGTCTTTGGCGAGTATGAAATGCGATTACAG

upper sequence: GLYMA16G22880.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0008g01350.t01 (Vitis vinifera), 3'ss of exon 5
gtttatgcagtgattatatttaatatgcaaagaaatgccacttgatttttcttgaaaaatgtttctgtatgtagtttcttattactgcatcttcctttgctagTTACCAGAATGCCTTCGCATTATTGGATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTG
|| ||| || ||| | ||| | ||| | || | || | || | | || | || | | | || | || |||||||||| || || |||||||||||||||||||| |||||||||||||||||||||| || ||||||||| | |
gtatat-tgtctgctacattaagcatgtgacacaataatggataatctaggatgtgcattggaaattt-tgaatattttcctggatatatatgtgttg--cagTTACCAGATTGTCTCCGCATTATTGGATATTTACGTCGAATAGGAGTATTTAGTGAGTTTGAAATGCGTTTACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttgaaaaatgtttctgtatgtagtttcttattactgcatcttcctttgctagTTACCAGAATGCCTTCGCATTATTGGATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTG
                                    ctgcatcttccttt  CT-rich tract
 aaaaatgttt  TA-rich tract