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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGCTGTATCTGATTCATTGTTGCTGTACAATACAACTCGAGTTCTAAGATCTAACGAGTCAGGACTTTTCCGCTCACTCTGCCGGGCATTTATTGAGgtattttgtaactcttacagtacagcttgattgctgattccctttgtagctgatctgcagtcttcaataaaattactctacatattgattacttgatttc...

Basic information

species Glycine max
transcript GLYMA16G22880.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22525707|gb|BU084518.1|BU084518
EST:     GATCTAACGAGTCAGGACTTTTCCGCTCACTCTGCCGGGCATTTATTGAG                         GTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGA
genomic: GATCTAACGAGTCAGGACTTTTCCGCTCACTCTGCCGGGCATTTATTGAGgtattttgta ... caatttatagGTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGA
EST: gi|193359604|gb|FK324661.1|FK324661
EST:     GCCGGGCATTTATTTGTAG                         GTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGG
genomic: GCCGGGCATTTA-TTG-AGgtattttgta ... caatttatagGTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGG
EST: gi|208140825|gb|GD935223.1|GD935223
EST:     GCCGGGCATTTATTGAG                         GTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGA
genomic: GCCGGGCATTTATTGAGgtattttgta ... caatttatagGTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGA
EST: gi|193477017|gb|FK439108.1|FK439108
EST:     CATTTATTGAG                         GTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGA
genomic: CATTTATTGAGgtattttgta ... caatttatagGTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGA
EST: gi|208153773|gb|GD951830.1|GD951830
EST:     CATTTATTGAG                         GTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGA
genomic: CATTTATTGAGgtattttgta ... caatttatagGTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGA
EST: gi|208283656|gb|GE082412.1|GE082412
EST:     CATTTATTGAG                         GTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGA
genomic: CATTTATTGAGgtattttgta ... caatttatagGTTGCTTATCCTCATTGTGCAACTTGTTTTGGGCGTTGCTATCCGGGTGGA