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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACCAGAATGCCTTCGCATTATTGGATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTGgtgaggtttaatgattttttttttccaatgcaaactttctttgtccttgttgcttgtcttttaccttgaaattttcagtttagttgcagctccttggtactttttttttctggcttccatttgactcaatggttatttattgtctcag

Basic information

species Glycine max
transcript GLYMA16G22880.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G22880.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G11980.1 (Arabidopsis thaliana), 5'ss of exon 6
TTACCAGAATGCCTTCGCATTATTGGATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTGgtgaggtttaatgattttttttttccaatgcaaactttctttgtccttgttgcttgtcttttaccttgaaattttcagtttagttgcagctccttggtactttttttttctggcttccatttgactcaatggttatttattgtctcag
||||||||||| || |||||||||||||| ||||| |||||||| || ||| | ||||||| |||||| || | |||||  | |  |||  | |    |   | |  | | |||  |  | ||||    |  ||||  |  || |||| |   ||  ||   |||||  |  |   || ||  |    ||||   |  |  ||                    
TTACCAGAATGTCTCCGCATTATTGGATACTTACGCCGAATAGGTGTCTTTGGCGAGTATGAAATGCGATTACAGgtgaaatattttgacatataacatttgaggttatccttccattacattgt---attcctttgtctatggaattgttcattctgta--agctctgtcttcacttgttaatggatcttcttgtctatgcag-------------------

upper sequence: GLYMA16G22880.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0008g01350.t01 (Vitis vinifera), 5'ss of exon 6
TTACCAGAATGCCTTCGCATTATTGGATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTGgtgaggtttaatgattttttttttccaatgcaaactttctttgtccttgttgcttgtcttttaccttgaaattttcagtttagttgcagctccttggtactttttttttctggcttccatttgactcaatggttatttattgtctcag
|||||||| || || |||||||||||||||||||| |||||||||||||||||||||| || ||||||||| | |||    |||  ||| || | |||    ||| | |   || |  | ||  | | || | || |    |   ||||   |   |    |   |   || ||                                                 
TTACCAGATTGTCTCCGCATTATTGGATATTTACGTCGAATAGGAGTATTTAGTGAGTTTGAAATGCGTTTACAGgta---ttttctgaattctctttgttcatgaatatgctcatgtttctgatagattcttttatgtgcttgtattt---gaccaagatcttttatgtgatatag----------------------------------------------