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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtccttcatcttactgctatcatttttaactttaaagtgctgcatgattctaaagattctccccccttattggctcagATTTACTTAAACGCAAGAAATCATCGGACACCGTTAATGTTGTCAAAGTGGCACACAGTCAACCATCTAGACCACAGTTAAGACACAT

Basic information

species Glycine max
transcript GLYMA16G21840.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G21840.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv04s0044g01840.t01 (Vitis vinifera), 3'ss of exon 8
gtatggtccttcatctt-actgctatcatttttaac---tttaaagtgctgcatgattctaaagattc-tccccccttattggctcagATTTACTTAAACGCAAGAAATCATCGGACACCGTTAATGTTGTCAAAGTGGCACACAGTCAACCATCTAGACCACAGTTAAGACACAT
||||||    | | |   | |  ||||  |   ||    ||||   |||    ||   || ||  |   |       ||||| ||||| ||||||||||||||||||| ||||| ||   |   ||| ||||||||  |||| ||   || || ||| ||||||            
gtatggcttctgaacaagagtattatccataaaaatatatttagcctgcaaactgcccctcaatttgaatttttgtctattgactcagGTTTACTTAAACGCAAGAAACCATCGAACCTTGAGCATGCTGTCAAAGCTGCACGCACCAAAGCAGCTAAACCACA------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12688892|gb|BG155228.1|BG155228
EST:     AATTCTTTGTCTATGCAAAAGCGTGAAAAACAACTTAAAAACATTT                         ATTTACTTAAACGCAAGAAATCATCGGACACCGTTAATGTTGTCAAAGTGG
genomic: AATTCTTTGTCTATGCAAAAGCGTGAAAAACAACTTAAAAACATCAgtatggtcct ... attggctcagATTTACTTAAACGCAAGAAATCATCGGACACCGTTAATGTTGTCAAAGTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaactttaaagtgctgcatgattctaaagattctccccccttattggctcagATTTACTTAAACGCAAGAAATCATCGGACACCGTTAATGTTGTCAAAGTGGCACACAGTCAACCATCTAGACCACAGTTAAGACACAT
                        ttctaaa  putative branch site (score: 2)
                                 ttctccccccttatt  putative PPT
     actttaaa  TA-rich tract