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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acatcaattacactatgcttcaagttttagttcacagcagttgttttcatgttgccaattgctatgatatatgcctaattggggttatatatatgaatagGTTACCTCATGTAAATTCTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAA

Basic information

species Glycine max
transcript GLYMA16G21840.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G21840.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0044g01840.t01 (Vitis vinifera), 3'ss of exon 3
----acatcaattacactatgcttcaagttttagttcacagcagttgttttcatgttgccaattgcta-tgatatatgcctaattggggttatatatatgaatagGTTACCTCATGTAAATTCTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAA
      ||| ||  ||   |||   |  ||| | ||  ||  | || || |   ||||  |||| | | |  |||||     |   |  || ||  | || |||||| || ||||| ||| | |||||||||||||||||||| || ||||| |||||
tttataatccatagcagggtgcgctat-tttcaattttcaa-aattattct---gttgataatttccaatactatataatacaagtgtattctacttgtggatagGTGACTTCATGCAAACTGTGGCGGCAAGTGGGAGAGTCCTTTAAACCCCCAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatgttgccaattgctatgatatatgcctaattggggttatatatatgaatagGTTACCTCATGTAAATTCTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAA
                           gcctaat  putative branch site (score: 3)
                                       ttatatatatgaata  TA-rich tract