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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcctcctttagttgcatatgcattaggctttgcaagtggaactgtgatagctatacttatttgtgtcttacaatccctcttgcctgttcagtctgtccagGGTTCAGCATCATCAGGTAGGGCACGGAGAGATGCTGCAGCAAGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTTAGCAATGGTGAATTTAGTGATC

Basic information

species Glycine max
transcript GLYMA16G21840.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G21840.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0044g01840.t01 (Vitis vinifera), 3'ss of exon 6
tcctcctttagttgcatatgcattaggctttgcaagtgg-aactgtgatagctatacttatttgtgtcttacaatc-cctcttgcctgttcagtctgtccagGGTTCAGCATCATCAGGTAGGGCACGGAGAGATGCTGCAGCAAGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTTAGCAATGGTGAATTTAGTGATC---
      |  | |   |||||||  ||   |    | |    |   |    |||| ||   ||  ||| |    | | | || ||  || |     | | |||| ||||| ||||   || || ||||| || |||||||||||  |||| |||||||||||||||||||| ||||| ||| | || |||||| || |||| |   
-atgtatccattgttatatgcaccagatatcattattcatgaacatatatgcta-accacttcatgtatgctgaccacttcatgtgtgctggtggtattcagGCTTCAGGATCA---GGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAGGGTTGGCACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatagctatacttatttgtgtcttacaatccctcttgcctgttcagtctgtccagGGTTCAGCATCATCAGGTAGGGCACGGAGAGATGCTGCAGCAAGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTTAGCAATGGTGAATTTAGTGATC
                   gtcttac  putative branch site (score: 3)
                                              tctgtcc  putative PPT
      tatacttattt  TA-rich tract