1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGTCTTGACCGCAATAGCTGGTGAGACAGCCGCACAACTTCCTGAAGCTGCGAGGAAAGAAAGGGTGAAGCAACCTGCTCAAAGTGTTGGAGCCGCAGAGgtatgcgtagtttgttcattttccttataaacatggctctttcttgcctcacacttaacaccaattatggaatgcattattatttgcag
species | Glycine max |
transcript | GLYMA12G08510.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGAGGAAAGAAAGGGTGAAGCAACCTGCTCAAAGTGTTGGAGCCGCAGAG GAAGAGGCTATAGCTGAGGGTGTTGATGATGAGGAAGAAATGGAAGAAATAEST: gi|151398806|gb|EV268677.1|EV268677
genomic: CGAGGAAAGAAAGGGTGAAGCAACCTGCTCAAAGTGTTGGAGCCGCAGAGgtatgcgtag ... ttatttgcagGAAGAGGCTATAGCTGAGGGTGTTGATGATGAGGAAGAAATGGAAGAAATA
EST: GAGGAAAGAAAAGGGTGAAGCAACCTGCTCAA-GTGTTGGAGCCGCAGAG GAAGAG-CTATAGCTGAGEST: gi|207753693|gb|GD723291.1|GD723291
genomic: GAGGAAAGAAA-GGGTGAAGCAACCTGCTCAAAGTGTTGGAGCCGCAGAGgtatgcgtag ... ttatttgcagGAAGAGGCTATAGCTGAG
EST: CGAGGAAAGAAAGGGTGAAGCAACCTGCTCGAAGTGTTGGAGCCGCAGAG GAAGAGGCTATAGCTGAGGGTGTTGATGATGAGGAAGAAATGGAAGAAATA
genomic: CGAGGAAAGAAAGGGTGAAGCAACCTGCTCAAAGTGTTGGAGCCGCAGAGgtatgcgtag ... ttatttgcagGAAGAGGCTATAGCTGAGGGTGTTGATGATGAGGAAGAAATGGAAGAAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCTTGACCGCAATAGCTGGTGAGACAGCCGCACAACTTCCTGAAGCTGCGAGGAAAGAAAGGGTGAAGCAACCTGCTCAAAGTGTTGGAGCCGCAGAGgtatgcgtagtttgttcattttccttataaacatggctctttcttgcctcacacttaacaccaattatggaatgcattattatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG