1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggcggtgatttgttttatctgttgagatttcaaggttaaaagcataaggtcagtattttgagaaacatttcttcttaatgtgatattgtgcaatttgtagGCACTTGCTAAGGAACTTGTGAGATCTAGGAAAACGGTGAACCGTCTTTATGAAAATAAAGCACAAATGAATTCAATATCAATGCACCTTGGAGAGAGTG
species | Glycine max |
transcript | GLYMA12G08510.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAAGGCGATTAGAGAAGCAGCAAAGAGGAATGACATGGGCTCTGCAAAG GCACTTGCTAAGGAACTTGTGAGATCTAGGAAAACGGTGAACCGTCTTTATEST: gi|151398806|gb|EV268677.1|EV268677
genomic: AGAAGGCGATTAGAGAAGCAGCAAAGAGGAATGACATGGGCTCTGCAAAGgtttgctttt ... caatttgtagGCACTTGCTAAGGAACTTGTGAGATCTAGGAAAACGGTGAACCGTCTTTAT
EST: AGAAGGCGATTAGAGAAGCAGCAAAGAGGAATGACATGGGCTCTGCAAAG GCACTTGCTAAGGAACTTGTGAGATCTAGGAAAACGGTGAACCGTCTTTATEST: gi|6667604|gb|AW279055.1|AW279055
genomic: AGAAGGCGATTAGAGAAGCAGCAAAGAGGAATGACATGGGCTCTGCAAAGgtttgctttt ... caatttgtagGCACTTGCTAAGGAACTTGTGAGATCTAGGAAAACGGTGAACCGTCTTTAT
EST: AGAAGGCGATTAGAGAAGCAGCAAAGAGGAATGACATGGGCTCTGCAAAG GCACTTGCTAAGGAACTTGTGAGATCTAGGAAAACGGTGAACCGTCTTTAT
genomic: AGAAGGCGATTAGAGAAGCAGCAAAGAGGAATGACATGGGCTCTGCAAAGgtttgctttt ... caatttgtagGCACTTGCTAAGGAACTTGTGAGATCTAGGAAAACGGTGAACCGTCTTTAT
aaggtcagtattttgagaaacatttcttcttaatgtgatattgtgcaatttgtagGCACTTGCTAAGGAACTTGTGAGATCTAGGAAAACGGTGAACCGTCTTTATGAAAATAAAGCACAAATGAATTCAATATCAATGCACCTTGGAGAGAGTG
tcttaat putative branch site (score: 3)
agtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcggtgatttgttttatctgttgagatttcaaggttaaaagcataaggtcagtattttgagaaacatttcttcttaatgtgatattgtgcaatttgtagGCACTTGCTAAGGAACTTGTGAGATCTAGGAAAACGGTGAACCGTCTTTATGAAAATAAAGCACAAATGAATTCAATATCAATGCACCTTGGAGAGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
ggcggtg
- - - - - - - - -tctgttg