1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTATCAAAGAGTGCTGAGGTTATGAAGCTTGTCAATAACCTCATAAAGGCTCCTGAAATGGCTGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGgtatgcctgcaatccttttaatgaagcataagaataccactttttcaatcttgtctcccctctctgtggttagagaagatagtttcattggtagttatgaggaatgctgtctctttcag
species | Glycine max |
transcript | GLYMA12G08510.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCCTGAAATGGCTGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAG GCAGGAGTTATTGAGGAGATAGTAAATGATGCTGTTGACACAGCACTAGATEST: gi|193415402|gb|FK381006.1|FK381006
genomic: CTCCTGAAATGGCTGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGgtatgcctgc ... tctctttcagGCAGGAGTTATTGAGGAGATAGTAAATGATGCTGTTGACACAGCACTAGAT
EST: CTCCTGAAATGGCTGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAG GCAGGAGTTATTGAGGTGATAEST: gi|193419986|gb|FK385424.1|FK385424
genomic: CTCCTGAAATGGCTGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGgtatgcctgc ... tctctttcagGCAGGAGTTATTGAGGAGATA
EST: CTCCTGAAATGGCTGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAG GCAGGAGTTATTGAGEST: gi|15204584|gb|BI427352.1|BI427352
genomic: CTCCTGAAATGGCTGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGgtatgcctgc ... tctctttcagGCAGGAGTTATTGAG
EST: CTCCTGAAATGGCTGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAG GCAGGAGTTATTGAGGAGATAGTAAATGATGCTGTTGACACAGCACTAGATEST: gi|151398806|gb|EV268677.1|EV268677
genomic: CTCCTGAAATGGCTGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGgtatgcctgc ... tctctttcagGCAGGAGTTATTGAGGAGATAGTAAATGATGCTGTTGACACAGCACTAGAT
EST: CTCCTGAAATGGCTGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAG GCAGGAGTTATTGAGGAGATAGTAAATGATGCTGTTGACACAGCACTAGATEST: gi|193454875|gb|FK421232.1|FK421232
genomic: CTCCTGAAATGGCTGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGgtatgcctgc ... tctctttcagGCAGGAGTTATTGAGGAGATAGTAAATGATGCTGTTGACACAGCACTAGAT
EST: CTCCTGAAATGGCTGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAG GCAGGAGTTATTEST: gi|6667604|gb|AW279055.1|AW279055
genomic: CTCCTGAAATGGCTGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGgtatgcctgc ... tctctttcagGCAGGAGTTATT
EST: CTCCTGAAATGGCTGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAG GCAGGAGTTATTGAGGAGATAGTA
genomic: CTCCTGAAATGGCTGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGgtatgcctgc ... tctctttcagGCAGGAGTTATTGAGGAGATAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTATCAAAGAGTGCTGAGGTTATGAAGCTTGTCAATAACCTCATAAAGGCTCCTGAAATGGCTGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGgtatgcctgcaatccttttaatgaagcataagaataccactttttcaatcttgtctcccctctctgtggttagagaagatagtttcattggtagttatgaggaatgctgtctctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA