1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtactcctctctctcaaaaccctaattaattccccttttttgtgtttagttttggttatgcttgattttgtgtttatgtgtttctgttagATATACAGAGAGAAGAAAAAAATGTGCAGAAGGCGATTAGAGAAGCAGCAAAGAGGAATGACATGGGCTCTGCAAAG
species | Glycine max |
transcript | GLYMA12G08510.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAGCGCAGGCTTCGCCAAGGGTGTCGCAACATTGAGCGCCAAATTCGCG ATATACAGAGAGAAGNNNNNNNTGTGCAGAAGGCGATTAGAGAAGCAGCAAEST: gi|151398806|gb|EV268677.1|EV268677
genomic: GCAGCGCAGGCTTCGCCAAGGGTGTCGCAACATTGAGCGCCAAATTCGCGgtactcctct ... tttctgttagATATACAGAGAGAAGAAAAAAATGTGCAGAAGGCGATTAGAGAAGCAGCAA
EST: GCAGCGCAGGCTTCGCCAAGGGTGTCGCAACATTGAGCGCCAAATTCGCG ATATACAGAGAGAAGNNNNNNNTGTGCAGAAGGCGATTAGAGAAGCAGCAAEST: gi|6667604|gb|AW279055.1|AW279055
genomic: GCAGCGCAGGCTTCGCCAAGGGTGTCGCAACATTGAGCGCCAAATTCGCGgtactcctct ... tttctgttagATATACAGAGAGAAGAAAAAAATGTGCAGAAGGCGATTAGAGAAGCAGCAA
EST: GCAGCGCAGGCTTCGCCAAGGGTGTCGCAACATTGAGCGCCAAATTCGCG ATATACAGAGAGAAGNNNNNNNTGTGCAGAAGGCGATTAGAGAAGCAGCAA
genomic: GCAGCGCAGGCTTCGCCAAGGGTGTCGCAACATTGAGCGCCAAATTCGCGgtactcctct ... tttctgttagATATACAGAGAGAAGAAAAAAATGTGCAGAAGGCGATTAGAGAAGCAGCAA
ttttttgtgtttagttttggttatgcttgattttgtgtttatgtgtttctgttagATATACAGAGAGAAGAAAAAAATGTGCAGAAGGCGATTAGAGAAGCAGCAAAGAGGAATGACATGGGCTCTGCAAAG
gcttgat putative branch site (score: 5)
tttctgtt putative PPT
tttagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcctctctctcaaaaccctaattaattccccttttttgtgtttagttttggttatgcttgattttgtgtttatgtgtttctgttagATATACAGAGAGAAGAAAAAAATGTGCAGAAGGCGATTAGAGAAGCAGCAAAGAGGAATGACATGGGCTCTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG