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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcgtagtttgttcattttccttataaacatggctctttcttgcctcacacttaacaccaattatggaatgcattattatttgcagGAAGAGGCTATAGCTGAGGGTGTTGATGATGAGGAAGAAATGGAAGAAATAAGGGCCCGACTTGCTAAAGTTAGATCGTAAACAAGTTTCTAATCTCGCA

Basic information

species Glycine max
transcript GLYMA12G08510.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08510.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0061g00540.t01 (Vitis vinifera), 3'ss of exon 6
gtatgcgtagtttgttcattttccttataaacatggctctttcttgcctcacacttaacaccaattatggaatgcattattatttgcagGAAGAGGCTATAGCTGAGGGTGTTGATGATGAGGAAGAAATGGAAGAAATAAGGGCCCGACTTGCTAAAGTTAGATCGTAAACAAGTTTCTAATCTCGCA
      |||  |     |  | ||  | |      | ||  | |||  | ||  | | | | || |||  |     ||| | ||||||||| || || || |||||||||| |||||||||||||||| | ||||||||||||||| ||||||| |||||||| || ||    | ||   | |||  | 
------gtatgtaacagaactgccccaca--ttgagatccattttggataactttaagctcaaaatattcat----ttaatttttgcagGAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATAAGGGCCAGACTTGCCAAAGTTAGGTCCTAGTTTAATTCTGACTCTACCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204584|gb|BI427352.1|BI427352
EST:     CGAGGAAAGAAAGGGTGAAGCAACCTGCTCAAAGTGTTGGAGCCGCAGAG                         GAAGAGGCTATAGCTGAGGGTGTTGATGATGAGGAAGAAATGGAAGAAATA
genomic: CGAGGAAAGAAAGGGTGAAGCAACCTGCTCAAAGTGTTGGAGCCGCAGAGgtatgcgtag ... ttatttgcagGAAGAGGCTATAGCTGAGGGTGTTGATGATGAGGAAGAAATGGAAGAAATA
EST: gi|151398806|gb|EV268677.1|EV268677
EST:     GAGGAAAGAAAAGGGTGAAGCAACCTGCTCAA-GTGTTGGAGCCGCAGAG                         GAAGAG-CTATAGCTGAG
genomic: GAGGAAAGAAA-GGGTGAAGCAACCTGCTCAAAGTGTTGGAGCCGCAGAGgtatgcgtag ... ttatttgcagGAAGAGGCTATAGCTGAG
EST: gi|207753693|gb|GD723291.1|GD723291
EST:     CGAGGAAAGAAAGGGTGAAGCAACCTGCTCGAAGTGTTGGAGCCGCAGAG                         GAAGAGGCTATAGCTGAGGGTGTTGATGATGAGGAAGAAATGGAAGAAATA
genomic: CGAGGAAAGAAAGGGTGAAGCAACCTGCTCAAAGTGTTGGAGCCGCAGAGgtatgcgtag ... ttatttgcagGAAGAGGCTATAGCTGAGGGTGTTGATGATGAGGAAGAAATGGAAGAAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctctttcttgcctcacacttaacaccaattatggaatgcattattatttgcagGAAGAGGCTATAGCTGAGGGTGTTGATGATGAGGAAGAAATGGAAGAAATAAGGGCCCGACTTGCTAAAGTTAGATCGTAAACAAGTTTCTAATCTCGCA
                  acttaac  putative branch site (score: 3)
                                    aatgcattattattt  TA-rich tract