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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTGgtatgtgatatttcatttcatttaatttggtacaggttttgactctaaacttgattacagtttgagtttgttatcctaaatatatgctgaatcactgacc...

Basic information

species Glycine max
transcript GLYMA12G08470.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08470.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os05g22970.1 (Oryza sativa), 5'ss of exon 6
TAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTGgtatgtgatatttcatttcattta-atttggtaca---ggttttgactctaa-acttgattac--agtttgagtttgttatcctaaatatatgctgaatcactgacc------------------------------
 || ||||| || |||| ||||||||| |||||||| ||||| ||||| || || || |||||||| |||||||||||  ||   | ||||| |  | ||| ||     | || |   ||||  | |  || ||    | |    |||||  | |||  |  |  |   | |   | |                              
CAACTGGGGCACAGAAAATGATCCTGAATTCAAAGGTTACCATAATGGGAACTCAGACCCTCGTGGTTTTGgtatgtgcaatgagaattcatatgcaattgatatgatcgcttctttttctatcattatatgacttgatatcttcttgttgccataataacctcttagctgatgcaacacttgtattttcttcattctgttcattcag

upper sequence: GLYMA12G08470.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G125310_T01 (Zea mays), 5'ss of exon 6
TAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTGgtatgt-----gatatttcat-ttcatttaatttggt--acaggttttgactctaaact--tgattacagtttgagtttgttatcctaaatata-tgctgaatcactgacc--------------------------------------
 || ||||| || |||| ||| ||||| |||||||| ||||| ||||| || || || |||||||| ||||||||||     || | || || |||| || |  ||    |||| || ||  ||  || |  |    | |||||  ||    ||   || ||||| |  |||| |||  |                                        
CAACTGGGGCACGGAAAATGACCCTGAATTCAAAGGTTACCATAATGGGAACTCAGACCCTCGTGGTTTTGgtatgtgctttgacaatttatgttcaattgaaatgactgacagtttctgtttccgaaatcataggcatagtttcggtgctgtaagatatatataattgtgaaacacatattgctctaacgcttgtatttgctcacttttgttcattcag

upper sequence: GLYMA12G08470.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G08110.3 (Arabidopsis thaliana), 5'ss of exon 6
TAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTGgtatgtgatatttcatttcattt--aatttggtacaggttttgactctaaact---tgattacagtttgagtttgttat--cctaaatatatgctgaatcactgacc
 || |||||||| || |||||||||||||| ||||| || |||||||| || ||||| |||||||| |||||||         | |    || |  |  ||  ||    | |  | ||  || |   ||| || |||||  ||  |||||    ||         | |||        
CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTGgtaacctcctcctaaaaatatctctatcttattatctctctacattcagaagtaactgaatagagtttcggtaggttatgttttaggggagctttaaata-------

upper sequence: GLYMA12G08470.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0061g00460.t01 (Vitis vinifera), 5'ss of exon 6
TAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTGgtatgtgatatttcatttcatttaatttggtacaggttttgactctaaacttg-attacagtttgagtttgttatcctaaatatatgc-tgaatcactgacc
 || ||||||||||| ||||||||||| |||||||| ||||||||||| || || ||||||||||| |||||||||| |||  | |  | ||| | ||  | |    ||   |||  | | |    |     | |   | | |  |||| || ||||   |  ||      | 
CAACTGGGGTACTGAGAGTGATCCTGACTTCAAAGGTTACCACAATGGGAACTCAGAACCTCGTGGATTTGgtatgt-atagctgaaat-attgacttaagaatgtcttggaacttgacaatcatgtggtgatatatttgtctcttccttaacatatttgttgatagtcttct

upper sequence: GLYMA12G08470.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ12454 (Selaginella moellendorffii), 5'ss of exon 5
TAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTGgtatgtgatatttcatttcatttaatttggtacaggttttgactctaaacttgattacagtttgagtttgttatcctaaatatatgctgaatcactgacc
 || ||||| ||||| |  ||||| ||||| ||||||||||||||||| ||| |||| ||||| |||| |||||         || | || || | |||  |     | ||      |||   ||  ||  | |||  |||| |                           
CAACTGGGGGACTGAGACGGATCCAGAGTTTAAAGGCTACCACAATGGAAATGCTGATCCTCGCGGCTATGgtagaccccgaatc-tctctttcacttttct-----tctttctctcaaaagggaaaaccttgtgatcttgtaaag-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17022376|gb|BM093410.1|BM093410
EST:     TCCTGAGTTCAAAGGGTACCACAATGGCAATTCTGAACCTCGTGGCTTTG                         GACACATGGGTATAACTGCTGATGACACAT
genomic: TCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTGgtatgtgata ... ctgtatacagGACACATTGGTATAACTGTTGATGACACAT
EST: gi|6724946|gb|AW309345.1|AW309345
EST:     TCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTG                         GACACATTGGTATAACTGTTGATGACACATACAAGGCATGTGAAAGATTTC
genomic: TCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTGgtatgtgata ... ctgtatacagGACACATTGGTATAACTGTTGATGACACATACAAGGCATGTGAAAGATTTC
EST: gi|12489864|gb|BG043385.1|BG043385
EST:     TCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTNTG                         GACACATTGGTATAACTGTTGATGACACATACAAGGCATGTGAAAGATNTC
genomic: TCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTGgtatgtgata ... ctgtatacagGACACATTGGTATAACTGTTGATGACACATACAAGGCATGTGAAAGATTTC