1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attggtctggtttcctagctacaaattcttttttatttttgaatttcttcctcagctgtcaatgccatgaatgctgatggcagtttgttggttggtttagTTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATGGGCTATGAG
species | Glycine max |
transcript | GLYMA12G08470.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTC TTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATEST: gi|17022376|gb|BM093410.1|BM093410
genomic: AAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTCgtaagttttt ... gttggtttagTTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCAT
EST: AAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTC TTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATEST: gi|23734537|gb|BU765505.1|BU765505
genomic: AAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTCgtaagttttt ... gttggtttagTTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCAT
EST: AAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTC TTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATEST: gi|6724946|gb|AW309345.1|AW309345
genomic: AAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTCgtaagttttt ... gttggtttagTTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCAT
EST: TTGATTTTTATTCTCGCGTCCTGGNGCATGTC TTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCAEST: gi|12489864|gb|BG043385.1|BG043385
genomic: TTGATTTTTATTCTCGCGTCTTGG-GCATGTCgtaagttttt ... gttggtttagTTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCA
EST: AAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTC TTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCAT
genomic: AAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTCgtaagttttt ... gttggtttagTTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCAT
tcttcctcagctgtcaatgccatgaatgctgatggcagtttgttggttggtttagTTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATGGGCTATGAG
tgctgat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attggtctggtttcctagctacaaattcttttttatttttgaatttcttcctcagctgtcaatgccatgaatgctgatggcagtttgttggttggtttagTTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATGGGCTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - -tctggtt
- - - - - - - - agctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgct