1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taaatatcaactatctgaaagttcatatacagagtttttctaattttcatgtgtatgcctttgatctttttcttacatttttttttttgttgttgtttagGATACAACAGAAGCTCCAAGTAATCCAATTGATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA
species | Glycine max |
transcript | GLYMA12G08470.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATGGGCTATGAG GATACAACAGAAGCTCCAAGTAATCCAATTGATAAAGTGGTTTGGACCTTTEST: gi|17022376|gb|BM093410.1|BM093410
genomic: GATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATGGGCTATGAGgtatgatcaa ... tgttgtttagGATACAACAGAAGCTCCAAGTAATCCAATTGATAAAGTGGTTTGGACCTTT
EST: GATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATGGGCTATGAG GATACAACAGAAGCTCCAAGTAATCCAATTGATAAAGTGGTTTGGACCTTTEST: gi|23734537|gb|BU765505.1|BU765505
genomic: GATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATGGGCTATGAGgtatgatcaa ... tgttgtttagGATACAACAGAAGCTCCAAGTAATCCAATTGATAAAGTGGTTTGGACCTTT
EST: GATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATGGGCTATGAG GATACAACAGAAGCTCCAAGTAATCCAATTGATAAAGTGGTTTGGACCTTTEST: gi|6724946|gb|AW309345.1|AW309345
genomic: GATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATGGGCTATGAGgtatgatcaa ... tgttgtttagGATACAACAGAAGCTCCAAGTAATCCAATTGATAAAGTGGTTTGGACCTTT
EST: GATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATGGGCTATGAG GATACAACAGAAGCTCCAAGTAATCCAATTGATAAAGTGGTTTGGACCTTTEST: gi|12489864|gb|BG043385.1|BG043385
genomic: GATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATGGGCTATGAGgtatgatcaa ... tgttgtttagGATACAACAGAAGCTCCAAGTAATCCAATTGATAAAGTGGTTTGGACCTTT
EST: GATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATGGGCTATGAG GATACAACAGAAGCTCCAAGTAATCCAATTGATAAAGTGGTTTGGACCTTT
genomic: GATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATGGGCTATGAGgtatgatcaa ... tgttgtttagGATACAACAGAAGCTCCAAGTAATCCAATTGATAAAGTGGTTTGGACCTTT
ttcatgtgtatgcctttgatctttttcttacatttttttttttgttgttgtttagGATACAACAGAAGCTCCAAGTAATCCAATTGATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA
ttcttac putative branch site (score: 2)
cctttgatctttttct CT-rich tract
tttgatctttttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaatatcaactatctgaaagttcatatacagagtttttctaattttcatgtgtatgcctttgatctttttcttacatttttttttttgttgttgtttagGATACAACAGAAGCTCCAAGTAATCCAATTGATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA
- - - - - ctatctg
- - - - - - - - - - - -catatac
- - - - - - - - - - - - - - - - - - - - - - - tcatgtg