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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggaatataaatacgctatatttctttatccgagtctcttttctaacaataagataatgtacagTAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTG

Basic information

species Glycine max
transcript GLYMA12G08470.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08470.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G08110.3 (Arabidopsis thaliana), 3'ss of exon 5
----gtatggaatataaatacgctatatttctttatccgagtct---------cttttctaaca-ataagata-atgtacagTAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTG
    | |   ||||  ||| |  ||  ||   |  | |   |||         | ||||| ||| || |  |  |  | ||| || |||||||| || |||||||||||||| ||||| || |||||||| || ||||| |||||||| ||||
gtaagaaacaaatactaatcccttactttctctctttcctttcttggattgaacatttcttacatatgaattttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTG

upper sequence: GLYMA12G08470.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0061g00460.t01 (Vitis vinifera), 3'ss of exon 5
---------------------------------gtatggaatataaatacgctatatttctttatccgagtctcttttctaac----aat-----aagataatgt-acagTAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTG
                                  | || || | ||     ||   || |     || ||| |   |   |||    |||     || | | ||| |||| || ||||||||||| ||||||||||| |||||||| ||||||||||| || || ||||||||||| ||||
gtaacaattatcatttattttgatgtcctctctatctgcaaaacaatctttctggcttacccatccctagttttgctgacaacgtgtaatgttccaaaaaattgttacagCAACTGGGGTACTGAGAGTGATCCTGACTTCAAAGGTTACCACAATGGGAACTCAGAACCTCGTGGATTTG

upper sequence: GLYMA12G08470.1 (Glycine max), 3'ss of exon 5
lower sequence: EFJ12454 (Selaginella moellendorffii), 3'ss of exon 4
gtatggaatat-aaatacgctatatttctttatccgagtctcttttctaacaataagataatgtacagTAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTG
||| | ||| |   | |   | | ||  | ||  ||  | | ||            |  | ||||  | || ||||| ||||| |  ||||| ||||| ||||||||||||||||| ||| |||| ||||| |||| ||
gtacgtaatgttggagagattgttttcttctaatcgtatgtgtt-----------gggcattgta--gCAACTGGGGGACTGAGACGGATCCAGAGTTTAAAGGCTACCACAATGGAAATGCTGATCCTCGCGGCTATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21256266|gb|BQ453154.1|BQ453154
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGTGATCCTGAGTTCAA-GGCT
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtatggaata ... taatgtacagTAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCT
EST: gi|17022376|gb|BM093410.1|BM093410
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtatggaata ... taatgtacagTAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAA
EST: gi|6724946|gb|AW309345.1|AW309345
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtatggaata ... taatgtacagTAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAA
EST: gi|12489864|gb|BG043385.1|BG043385
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGNGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtatggaata ... taatgtacagTAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatacgctatatttctttatccgagtctcttttctaacaataagataatgtacagTAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTG
                               ttctaac  putative branch site (score: 1)
                                  taacaataagataat  TA-rich tract