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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccaatttcatgctttctttcattctaattcgtatattcttttgttgtcaatgctctctttttttcttcgcagAAACCGAATCGATTCCGATTCCGATTCCGATCAATGGCTGCGGAACCCAAGGAATCGCCTTCCAACAACCCCGGTCTTCACACTACCCCTGACGAAGCCA

Basic information

species Glycine max
transcript GLYMA12G08470.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21256266|gb|BQ453154.1|BQ453154
EST:     TATCTCCTCATTCAACACCATCCCATTTTTCTCTCACCCCCAAAACCAAG                         AAACCGAATCGATTCCGATTCCGATTCCGATCAATGGCTGCGGAACCCAAG
genomic: TATCTCCTCATTCAACACCATCCCATTTTTCTCTCACCCCCAAAACCAAGgttccaattt ... ttcttcgcagAAACCGAATCGATTCCGATTCCGATTCCGATCAATGGCTGCGGAACCCAAG
EST: gi|17022376|gb|BM093410.1|BM093410
EST:     TATCTCCTCATTCAACACCATCCCATTTTTCTCTCACCCCCAAAACCAAG                         AAACCGAATCGATTCCGATTCCGATTCCGATCAATGGCTGCGGAACCCAAG
genomic: TATCTCCTCATTCAACACCATCCCATTTTTCTCTCACCCCCAAAACCAAGgttccaattt ... ttcttcgcagAAACCGAATCGATTCCGATTCCGATTCCGATCAATGGCTGCGGAACCCAAG
EST: gi|23734537|gb|BU765505.1|BU765505
EST:     TATCTCCTCATTCAACACCATCCCATTTTTCTCTCACCCCCAAAACCAAG                         AAACCGAATCGATTCCGATTCCGATTCCGATCAATGGCTGCGGAACCCAAG
genomic: TATCTCCTCATTCAACACCATCCCATTTTTCTCTCACCCCCAAAACCAAGgttccaattt ... ttcttcgcagAAACCGAATCGATTCCGATTCCGATTCCGATCAATGGCTGCGGAACCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattctaattcgtatattcttttgttgtcaatgctctctttttttcttcgcagAAACCGAATCGATTCCGATTCCGATTCCGATCAATGGCTGCGGAACCCAAGGAATCGCCTTCCAACAACCCCGGTCTTCACACTACCCCTGACGAAGCCA
    ttctaat  putative branch site (score: 2)
                             tcaatgctctcttttt  putative PPT
              tatattcttttgtt  TA-rich tract