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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgtttcttaacactgagctaatgcatatttttcctttccttatttacattaatttgcttattgttttcttttagGCATGGAGTGTGCCAGAAGTGTTGCGGCCACTTTATGAATCATCCAAGGTGGTTGCTCAGAAAATGACAATTGCA

Basic information

species Glycine max
transcript GLYMA12G08080.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08080.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os10g33960.2 (Oryza sativa), 3'ss of exon 8
-------------gttttgt-ttcttaacactgagctaa--tgcatatttttcctttccttatttacattaatttgcttat-tgttttcttttagGCATGGAGTGTGCCAGAAGTGTTGCGGCCACTTTATGAATCATCCAAGGTGGTTGCTCAGAAAATGACAATTGCA
             ||| ||  |||||   | | || |    |    ||||      |  ||  ||  |||||||| ||||  |  | | ||  |||| |||||||| ||||||||| | |||||||| || || ||||| | ||| ||||||||||||||||| | ||||
gtgtgatcttcaagttctgcattctttctagttagatgtgctctgcatttgagtcattatttcttttattaatttacttagattctattttacagGCTTGGAGTGTTCCAGAAGTGCTTCGGCCACTCTACGAGTCATCTAGGGTAGTTGCTCAGAAAATGACTACTGCA

upper sequence: GLYMA12G08080.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os03g01890.1 (Oryza sativa), 3'ss of exon 9
---------------------------gttttgtttcttaacactgagctaatgcatatttttcctttccttatttacattaatttg-cttattgttttcttttagGCATGGAGTGTGCCAGAAGTGTTGCGGCCACTTTATGAATCATCCAAGGTGGTTGCTCAGAAAATGACAATTGCA
                               ||||| ||  |  |      | |   ||||||   | |  |      | ||||     ||  | |  ||||| ||||||||||||| || || ||| | |||||||| |||||||| || | ||| || |||||||||||||| | ||| 
gtatttttcacacttttgtacagttgaaccatgttttttgtcctttgatgtaggaccatttttgtatcctgtcaaactaataatacaatttggtttaatctttcagGCATGGAGTGTTCCTGAGGTGCTTCGGCCACTCTATGAATCTTCAAGGGTAGTCGCTCAGAAAATGACTACTGCG

upper sequence: GLYMA12G08080.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g02800.t01 (Vitis vinifera), 3'ss of exon 8
gttttgtttcttaacactgagctaatgcatatttttcctttccttatttacattaatttgcttattgttttcttt-tagGCATGGAGTGTGCCAGAAGTGTTGCGGCCACTTTATGAATCATCCAAGGTGGTTGCTCAGAAAATGACAATTGCA
  |||| || ||  || |  |||  |  | ||||||| |       ||  || |   ||  ||  |    |||||  ||||||||||||||||||| ||| |||| |||||||||||||| || |  || || |||||||||||||| ||||||
-gtttgatttttggcagttggcttct-tagatttttcttgc-----ttggcaatggcttatttccttacatctttgcagGCATGGAGTGTGCCAGAGGTGCTGCGACCACTTTATGAATCTTCAAGAGTTGTAGCTCAGAAAATGACTATTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgcatatttttcctttccttatttacattaatttgcttattgttttcttttagGCATGGAGTGTGCCAGAAGTGTTGCGGCCACTTTATGAATCATCCAAGGTGGTTGCTCAGAAAATGACAATTGCA
                           cattaat  putative branch site (score: 3)
                                     cttattgttttctttt  putative PPT
                    ttatttacattaattt  TA-rich tract