Sequence
atgc intronic sequence ATGC exonic sequenceTGCAATGAACAAGTTGTTGATGGAGGAGAATGATCGGTTGCAGAAGCAGGTGTCACAGCTTGTGTGTGAGAATGGGTTTATGAGGCAGCAATTGCATACTgtaagtgtgtgtgtgttctgtcagattgtcaactcttcacctttttgggctcttaagtagaaaaaaaacattgttgaaaagaatgaactaaatgtgggga...
Basic information
species | Glycine max |
transcript | GLYMA12G08080.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G08080.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G469551_T02 (Zea mays), 5'ss of exon 3
TGCAATGAACAAGTTGTTGATGGAGGAGAATGATCGGTTGCAGAAGCAGGTGTCACAGCTTGTGTGTGAGAATGGGTTTATGAGGCAGCAATTGCATACTgtaagtgtgtgtgtgttctgtcagattgtcaactctt--cacctttttgggct-cttaagtaga---aaaaaaacattgttgaaaagaatga-actaaatgtgggga--------
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TGCAATGAACAAGCTTCTCATGGAGGAGAATGAGCGATTGCAGAAGCAGGTTTCCCAGCTGGTTCACGAGAATGCGTACATGAAGCAGCAGCTGCAGAATgtaagccctggttttgttaaccagaa-gccatatcgtggcatttctttggaatacctgcatgcttcttgctgccttttgttttctcttctgataccatctctttactgcttacag
upper sequence: GLYMA12G08080.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G60690.1 (Arabidopsis thaliana), 5'ss of exon 2
TGCAATGAACAAGTTGTTGATGGAGGAGAATGATCGGTTGCAGAAGCAGGTGTCACAGCTTGTGTGTGAGAATGGGTTTATGAGGCAGCAATTGCATACTgtaagtgtgtg---------tgtgttctgtcagat----tgtcaactcttcacctttttgggctcttaagtagaaaaaaaacatt-gttgaaaaga-atgaactaaatgtgggga------
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---GATGAATAAACTGTTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTTTCTCAGCTTGTCTGCGAAAATGGATATATGAAACAGCAGCTAACTACTGTT-
upper sequence: GLYMA12G08080.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g02800.t01 (Vitis vinifera), 5'ss of exon 2
TGCAATGAACAAGTTGTTGATGGAGGAGAATGATCGGTTGCAGAAGCAGGTGTCACAGCTTGTGTGTGAGAATGGGTTTATGAGGCAGCAATTGCATACTgtaagtgtgtgtgtgttctgtcagattgtcaactcttcacctttttgggctcttaagtagaaaaaaaacattgttgaaaagaatgaactaaatgtgggga---
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GGCCATGAACAAGCTGTTGATGGAGGAGAATGATCGGCTGCAGAAACAAGTGTCGCAGCTGGTATGCGAGAATGGGTATATGCGACAACAGCTTCAAACTgtatgttcttgttcatattat-agttggtgtcatacttatttcttccaagc--ggatctctatccttttatggttatctgcattatgatagttttgaaaagcaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|24136783|gb|BU927293.1|BU927293EST: TGTCACAGCTTGTGTGTGAGAATGGGTTTATGAGGCAGCAATTGCATACT CCATCAGCAGCAACTACTGATGCTAGTTGTGATTCGGTGGTTACCACTCCT
genomic: TGTCACAGCTTGTGTGTGAGAATGGGTTTATGAGGCAGCAATTGCATACTgtaagtgtgt ... atccctgcagCCATCAGCAGCAACTACTGATGCTAGTTGTGATTCGGTGGTTACCACTCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCAATGAACAAGTTGTTGATGGAGGAGAATGATCGGTTGCAGAAGCAGGTGTCACAGCTTGTGTGTGAGAATGGGTTTATGAGGCAGCAATTGCATACTgtaagtgtgtgtgtgttctgtcagattgtcaactcttcacctttttgggctcttaagtagaaaaaaaacattgttgaaaagaatgaactaaatgtgggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaagaa