1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
ACTGAAAGCCGGCACCTATGCCTATCCAGGGATGAGGCCTACAAGATTTACTGGCAGTCAAATAATTATGCCTCTTGGTCATACAATTGAACATGAAGAGgtaggtttgcattcccttaaaaattggatgaaggatgcatatttgctttgggccaagatttgtttgacatatgatatatttacatattattcagtagagtatgtcagcaatttatggtctgatctttttggacatttgtaattgtaagcaacattactgataaaattgtattttcactacag
species | Glycine max |
transcript | GLYMA12G08080.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CTGGCAGTCAAATAATTATGCCTCTTGGTCATACAATTGAACATGAAGAG ATGCTGGAAGTTATTAGGCTGGAAGGTCACTCTCTTGCTCAAGAAGATGCTEST: gi|298171746|gb|HO021338.1|HO021338
genomic: CTGGCAGTCAAATAATTATGCCTCTTGGTCATACAATTGAACATGAAGAGgtaggtttgc ... ttcactacagATGCTGGAAGTTATTAGGCTGGAAGGTCACTCTCTTGCTCAAGAAGATGCT
EST: CTGGCAGTCAAATAATTATGCCTCTTGGTCATACAATTGAACATGAAGAG ATGCTGGAAGTTATTAGGCTGGAAGATCACTCTCTTGCTCAAGAAGATGCTEST: gi|9204492|gb|BE330716.1|BE330716
genomic: CTGGCAGTCAAATAATTATGCCTCTTGGTCATACAATTGAACATGAAGAGgtaggtttgc ... ttcactacagATGCTGGAAGTTATTAGGCTGGAAGGTCACTCTCTTGCTCAAGAAGATGCT
EST: CTGGCAGTCAAATAATTATGCCTCTTGGTCATACAATTGAACATGAAGAG ATGCTGGAAGTTATTAGGCTGGAAGGTCACTCTCTTGCTCAAGAAGATGCTEST: gi|308098056|gb|HO761227.1|HO761227
genomic: CTGGCAGTCAAATAATTATGCCTCTTGGTCATACAATTGAACATGAAGAGgtaggtttgc ... ttcactacagATGCTGGAAGTTATTAGGCTGGAAGGTCACTCTCTTGCTCAAGAAGATGCT
EST: CTGGCAGTCAAATAATTATGCCTCTTGGTCATACAATTGAACATGAAGAG ATGCTGGAAGTTATTAGGCTGGAAGGTCACTCTCTTGCTCAAGAAGATGCT
genomic: CTGGCAGTCAAATAATTATGCCTCTTGGTCATACAATTGAACATGAAGAGgtaggtttgc ... ttcactacagATGCTGGAAGTTATTAGGCTGGAAGGTCACTCTCTTGCTCAAGAAGATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGAAAGCCGGCACCTATGCCTATCCAGGGATGAGGCCTACAAGATTTACTGGCAGTCAAATAATTATGCCTCTTGGTCATACAATTGAACATGAAGAGgtaggtttgcattcccttaaaaattggatgaaggatgcatatttgctttgggccaagatttgtttgacatatgatatatttacatattattcagtagagtatgtcagcaatttatggtctgatctttttggacatttgtaattgtaagcaacattactgataaaattgtattttcactacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA