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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTCTGAGCTTGTATTTGCTCCAATTGATGAAATGTTCCCCGATGATGCTCCATTGATTCCTTCTGGTTTCCGCATTATCCCATTAGATTCAAAACCAgttaagttttgttcctctgtattttgctttctataatctctaccgtgctttatttttttcagctctttacatcttcactcaagcttagcgcatgtaatga...

Basic information

species Glycine max
transcript GLYMA12G08080.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08080.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G109987_T05 (Zea mays), 5'ss of exon 14
TTGTTCTGAGCTTGTATTTGCTCCAATTGATGAAATGTTCCCCGATGATGCTCCATTGATTCCTTCTGGTTTCCGCATTATCCCATTAGATTCAAAACCAgttaagttttgttcctctgtattttgctttctataatctctaccgtgctt---tatttttttcagctctttacatctt-cactcaagcttagcgcatgtaatga
 |  |   ||||||| ||||| |||||||||||    ||||| |||||||||||||||||| ||||||| || ||  | || ||| | |||   ||| ||||||||  |||  |  |   |||    ||||  |  | | | || |||||    |     ||||  || ||   | ||    | |   ||| | | |   ||| 
CTCCTTCCAGCTTGTGTTTGCACCAATTGATGAGCATTTCCCAGATGATGCTCCATTGATTTCTTCTGGCTTTCGTGTCATACCACTTGATGTGAAAACAgttaagcattgc-caacaacattaccttttccct--ttttttccttgcttgggcagccgcttcatttccttgtctattatgtttataattatc-cttaacatgt

upper sequence: GLYMA12G08080.1 (Glycine max), 5'ss of exon 14
lower sequence: AT5G60690.1 (Arabidopsis thaliana), 5'ss of exon 14
TTGTTCTGAGCTTGTATTTGCTCCAATTGATGAAATGTTCCCCGATGATGCTCCATTGATTCCTTCTGGTTTCCGCATTATCCCATTAGATTCAAAACCAgttaagttttgttcctctgtattttgctttctataatctctaccgtgctttatttttttcagctctttacatcttcactcaagcttagcgcatgtaatga
||||||||| ||  |||||||||| ||| |||| |||||||| |||||||||||| |  |||| ||||| |||||  | || ||  | ||| | ||| | || |   ||  || || |     |   |||   |   ||      || ||| |||      |||| ||   |||| |||||  |                
TTGTTCTGAACTGATATTTGCTCCGATTAATGAGATGTTCCCGGATGATGCTCCACTTGTTCCCTCTGGATTCCGAGTCATACCCGTTGATGCTAAAACGgt-actcttctttgctgtaccactgatttttcttttacttagagatggtttgtttca--aggctcattttttctt-actcatacag--------------

upper sequence: GLYMA12G08080.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv06s0004g02800.t01 (Vitis vinifera), 5'ss of exon 14
TTGTTCTGAGCTTGTATTTGCTCCAATTGATGAAATGTTCCCCGATGATGCTCCATTGATTCCTTCTGGTTTCCGCATTATCCCATTAGATTCAAAACCAgttaagttttgttcctctgtattttgct-ttctataatctctaccgtgctttatttttttcagctctttacatcttcactcaagcttagcgcatgtaatga-
||||||||| ||||| ||||||||||||||||||||||| || |||||||||||| || | || |||||||| || || |||||| | ||||||||| ||||| |||         || ||  |   | ||||||    | |   |||   || |  ||  | |  |||  |       |  |  | |||  | |   |   
TTGTTCTGAACTTGTTTTTGCTCCAATTGATGAAATGTTTCCAGATGATGCTCCACTGTTACCCTCTGGTTTTCGGATCATCCCACTGGATTCAAAATCAgttgagtacaaccatgctctacctgaatattctatttcttttgttgtga--taatgattataacaatttgaaaaaaacttgcatatcagccaaagctttttc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308099106|gb|HO760947.1|HO760947
EST:     CTCCATTGATTCCTTCTGGTTTCCGCATTATCCCATTAGATTCAAAACCA                         GGTGACAAAAAGGAAGTTGCTACAAATCGGACCCTGGATTTGACATCTGGT
genomic: CTCCATTGATTCCTTCTGGTTTCCGCATTATCCCATTAGATTCAAAACCAgttaagtttt ... tgttttatagGGTGACAAAAAGGAAGTTGCTACAAATCGGACCCTGGATTTGACATCTGGT
EST: gi|308098056|gb|HO761227.1|HO761227
EST:     CTCCATTGATTCCTTCTGGTTTCCGCATTATCCCATTAGATTCAAAACCA                         GGTGACAAAAAGGAAGTTGCTACAAATCGGACCCTGGATTTGACATCTGGT
genomic: CTCCATTGATTCCTTCTGGTTTCCGCATTATCCCATTAGATTCAAAACCAgttaagtttt ... tgttttatagGGTGACAAAAAGGAAGTTGCTACAAATCGGACCCTGGATTTGACATCTGGT