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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATATGCTCCAACAACACTGGCTCCTGCCCGGGATTTCTGGACGCTGAGATATACCACCAGCTTGGAAAATGGTAGTCTTGTGgtgagcatgttttgtcatttgatgctctatatagattcatagaatttatgtaagaatgtcgtgttgtgttttgctttaaattcttcttgacgcattatat...

Basic information

species Glycine max
transcript GLYMA12G08080.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08080.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G60690.1 (Arabidopsis thaliana), 5'ss of exon 7
ACATATGCTCCAACAACACTGGCTCCTGCCCGGGATTTCTGGACGCTGAGATATACCACCAGCTTGGAAAATGGTAGTCTTGTGgtgagcatgttttgtcatttgatgctctatatagattcatagaatttatgtaagaatgtcgtgttgtgttttgctttaaattcttcttgacgcattatat
|| ||||| ||||| || |||||||||||||| ||||||||||| |||||||| || || ||| | || ||||| ||| |||||||  |||  | |  | ||       ||||  |   | || | ||  | ||  |   ||  || ||   | |  |||||||                    
ACGTATGCACCAACGACTCTGGCTCCTGCCCGCGATTTCTGGACCCTGAGATACACAACGAGCCTCGACAATGGGAGTTTTGTGgtatgcagctctcataatg------tcta-gtgtttacagaaaaactctgggatcttgatgtttttcatatgtctttaaaag------------------

upper sequence: GLYMA12G08080.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g02800.t01 (Vitis vinifera), 5'ss of exon 7
ACATATGCTCCAACAACACTGGCTCCTGCCCGGGATTTCTGGACGCTGAGATATACCACCAGCTTGGAAAATGGTAGTCTTGTGgtgagcatgttttgtcatttgatgctctatatagattcatagaatttatgtaagaa-tgtcgtgttgtgttttgctttaa-attcttcttgacgcattatat
| |||||| ||||| || ||||||||||| |||||||||||||| || ||||| |||||||| ||||| ||||| ||||| |||||  | || | ||    |||  |   | | ||  ||| | |     ||   |  |  ||   | ||  |  |    |  | | | || |  |   |||||  
ATATATGCCCCAACTACGCTGGCTCCTGCACGGGATTTCTGGACTCTAAGATACACCACCAGTTTGGACAATGGCAGTCTCGTGgtatgtatttcttccggttttgtag-ccagatgcattgacatgtgctactcatcacctgatttattaggaatactatggacactattataaaataattatt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24136783|gb|BU927293.1|BU927293
EST:     ATTTCTGGACGCTGAGATATACCACCAGCTTGGAAAATGGTAGTCTTGTG                         GTTTGTGAGAGGTCCCTGTCTGGTTCTGGAACAGGC
genomic: ATTTCTGGACGCTGAGATATACCACCAGCTTGGAAAATGGTAGTCTTGTGgtgagcatgt ... acttttgcagGTTTGTGAGAGGTCCCTGTCTGGTTCTGGAACAGGC