1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...atcaaatgtagaagttactgttgaataaaaaaaatatctatatgcaactattttttattgttggtttactgatgccatgtttctctccctcatctactagGACATCTGTGATCGTGTTGTGCGAGAATTGGAGACATCAGGTGTTTCAGGGTCTGCTGGTGACTTTCAAGTATCCAACGAAGCAAAATTAGGGCATGAGT
species | Glycine max |
transcript | GLYMA12G07980.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGCACATATTTTTGGGGATTTTTATGTGTTGAGCAGCAGCTTTATAAAG GACATCTGTGATCGTGTTGTGCGAGAATTGGAGACATCAGGTGTTTCAGGGEST: gi|298169300|gb|HO020660.1|HO020660
genomic: AAGCACATATTTTTGGGGATTTTTATGTGTTGAGCAGCAGCTTTATAAAGgtccgttgtg ... catctactagGACATCTGTGATCGTGTTGTGCGAGAATTGGAGACATCAGGTGTTTCAGGG
EST: GCAGCTTTATAAAG GACATCTGTGATCGTGTTGTGCGAGAATTGGAGACATCAGGTGTTTCAGGG
genomic: GCAGCTTTATAAAGgtccgttgtg ... catctactagGACATCTGTGATCGTGTTGTGCGAGAATTGGAGACATCAGGTGTTTCAGGG
aactattttttattgttggtttactgatgccatgtttctctccctcatctactagGACATCTGTGATCGTGTTGTGCGAGAATTGGAGACATCAGGTGTTTCAGGGTCTGCTGGTGACTTTCAAGTATCCAACGAAGCAAAATTAGGGCATGAGT
tactgat putative branch site (score: 2)
ccatgtttctctccct CT-rich tract
ttttttattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcaaatgtagaagttactgttgaataaaaaaaatatctatatgcaactattttttattgttggtttactgatgccatgtttctctccctcatctactagGACATCTGTGATCGTGTTGTGCGAGAATTGGAGACATCAGGTGTTTCAGGGTCTGCTGGTGACTTTCAAGTATCCAACGAAGCAAAATTAGGGCATGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - aatgtag
- - - - - - - - actgttg
- - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - tatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgatg